Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 246 2e-59 seq25 122 6e-22 seq12 107 1e-17 seq7 104 2e-16 seq23 86.0 4e-11 >seq1 Length=1824870 Score = 246 bits (272), Expect = 2e-59 Identities = 480/700 (69%), Gaps = 8/700 (1%) Strand=Plus/Plus Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536 ||| || ||| | | |||||||| |||||| | |||||| || | | ||||| || | Sbjct 1567880 AGCTTTGAGAAGATTGAGAACTGCATGTGAAAGAGCTAAGAGAACATTGTCTTCATCTGC 1567939 Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTAC 475596 || || ||||||| | || ||| | ||||| || || || | | || ||||| Sbjct 1567940 ACAGACCTCTGTTGAGATCGACTCTTTGTTTGAGGGTATCGACTTCTACACATCAATTAC 1567999 Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656 ||||| | |||||| || |||| || ||||| || ||| || | || || || || Sbjct 1568000 GAGGGCAAGATTTGAGGAGCTTTGCTCAGATCTGTTCAGATCTACTCTGGACCCTGTCGA 1568059 Query 475657 ACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGG 475716 | | ||| | || |||||||| |||||||| || | | | || ||||| ||||| || Sbjct 1568060 AAAGGTTTTGAGGGATTCTAAGCTTGACAAGGCAAAGATTGACGAGATTGTGCTTGTTGG 1568119 Query 475717 AGGTTCAACAAGAATTCCAAA-AATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAA 475775 ||||| |||||||||||||| | ||| || || |||| || ||||| ||||| Sbjct 1568120 TGGTTCTACAAGAATTCCAAAGGTTCAGA-AATTGGTTTCTGACTACTTTAACGGTAAGG 1568178 Query 475776 AGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAG 475835 || || || | | || ||||||||||||||||| ||||| ||||| || || |||| Sbjct 1568179 AGCCTAACAAATCTATCAACCCTGATGAAGCTGTTGCCTATGGTGCTGCAGTTCAGGCAG 1568238 Query 475836 CTATTTTATCAGGT--CAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAAC 475893 ||||||| | ||| | || ||| | ||| | | | | | ||| | || || || Sbjct 1568239 CTATTTTGACTGGTGACGATTCCTCGA-AGACTCAGGACT-TGTTGCTTTTGGATGTTAC 1568296 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 || | || || ||| | || || | ||| || ||||||| || | ||| ||||| Sbjct 1568297 ACCTTTATCTTTGGGTATCGAGACCGCTGGTGGTGTTATGACAAAGTTGATTCCAAGAAA 1568356 Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 | ||||||| ||||| || || || | || || |||||| | ||||| || || Sbjct 1568357 CTCCACTATCCCTTGCAAGAAGTCTGAAATCTTCTCTACTTATGCCGATAACCAGCCAGG 1568416 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| || || | | ||||||||||||| | || || || || || | || Sbjct 1568417 TGTGTTGATTCAGGTGTACGAAGGTGAAAGAACAAGAACCAAGGACAACAATTTGTTGGG 1568476 Query 476074 AACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTA 476132 | || | |||| || || || || || || ||||| ||||| || ||||| |||| Sbjct 1568477 TAAGTTCGA-GTTGACTGGAATCCCACCAGCACCAAGAGGGGTTCCACAGATTGAGGTTA 1568535 Query 476133 CTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||||||||| ||||||||||||||| | || ||| |||| Sbjct 1568536 CTTTTGATATCGATGCAAATGGTATTTTGAACGTTTCTGC 1568575 Score = 168 bits (186), Expect = 4e-36 Identities = 377/550 (69%), Gaps = 17/550 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGT-TTGGCAAAATGGTAA 474387 || ||||| |||||||| || ||||| ||| ||||| | | || ||||| || | Sbjct 1567119 GCTATTGGAATTGATTTGGGTACTACGTACTCATGTGTTGGTCACTTCGCAAA-TGACAG 1567177 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || |||||||| || |||||||| | || ||||| || ||||| |||| || Sbjct 1567178 AGTTGACATCATTGCCAACGATCAAGGTAACCGTACTACACCCTCTTATGTGGCTTTCAC 1567237 Query 474448 TGAAACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506 || || || | || | ||||| || ||||| || | |||||||| |||||| | Sbjct 1567238 AGACACCGAGAGAT-TGATTGGTGAGGCTGCCAAGAACCAAGCTGCGATGAATCCTTCCA 1567296 Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCA 474564 | ||| | || ||||| |||||| | || ||| | || || || ||| || || Sbjct 1567297 ACACTGTCTTCGATGCAAAAAGACTTATAGGTAGAAAGTTCAGCGA--CCAGGAGGTGCA 1567354 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA 474624 ||||||| || ||||| || || || | | || ||||| ||| | || | Sbjct 1567355 GAATGATATGAAGCACTGGCCATTCAAAGTCGTTGACTCTGAAGGTAAGCCAAAGATTCA 1567414 Query 474625 AGC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | |||||| | ||||| || || || |||| || | || || || |||||| Sbjct 1567415 GGTTGAATACAAG--GGTGAGACAAAGGTCTTCACACCAGAGGAGATCTCATCTATGGTT 1567472 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTGATGCAG 474740 || | ||||||| | ||||| ||| | || ||||| ||||| | | ||||| | Sbjct 1567473 TTGACAAAAATGAGAACCACCGCCGAGG-CTTA-CTTGGGAGAGAAGGTGAAGGATGCTG 1567530 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | |||| |||||||| || || |||||||| || | || ||||| |||||||| || | Sbjct 1567531 TGGTTACAGTTCCAGCTTACTTCAATGATTCCCAGAGACAGGCAACCAAAGATGCAGGTA 1567590 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||||| || | ||||| | | || || ||||| || || ||||| || |||||| Sbjct 1567591 CAATTGCTGGCATGAATGTGATGAGAATCATCAATGAGCCTACTGCAGCAGCTATTGCTT 1567650 Query 474861 ATGGTCTTGA 474870 ||||| |||| Sbjct 1567651 ATGGT-TTGA 1567659 Score = 109 bits (120), Expect = 4e-18 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| ||| ||| || || || || |||| | |||||| ||| || | Sbjct 738132 CAAG-TGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACCATCCTCCA 738074 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||| |||||||| || | | ||||||||||| |||||||| ||||| || || | Sbjct 738073 ACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTTATCCTGGA 738014 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||||| |||||| ||||| ||||| | | | | | ||| ||| ||||| ||| Sbjct 738013 TCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAA-GGTGATAGTCTTA 737955 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || | ||||||||||||||||| Sbjct 737954 CCCGTCAAGGTCTTAACGAAAATTTG 737929 >seq25 Length=757050 Score = 122 bits (134), Expect = 6e-22 Identities = 167/228 (73%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 474648 AACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-G 474706 |||| || ||||||| ||||| ||| | | | || | || ||||| || | ||| | Sbjct 742515 AACACTTCACACCGGAGCAAATCTCTGCCCTCATCTTGGGAAAGATGAAGCAGATCGCCG 742456 Query 474707 AGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 || | ||||||||| |||||| | ||| |||| || |||||||||| |||||||| || Sbjct 742455 AGGAC-TATCTTGGA-AAGAAGGTTACTCATGCTGTCGTTACTGTTCCTGCATATTTCAA 742398 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 ||| | || | ||||||||||||||||| || | |||||||| | || ||| | | Sbjct 742397 CGATGCCCAGAGACAAGCAACTAAAGATGCTGGTACGATTGCAGGCTTGAACGTTCTTAG 742338 Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 ||| ||||||| || || || ||||| |||| || ||| | || || Sbjct 742337 AATTGTTAATGAGCCTACCGCTGCCGCTATTGCCTACGGTTTGGACAA 742290 Score = 98.7 bits (108), Expect = 6e-15 Identities = 251/378 (66%), Gaps = 12/378 (3%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| |||||||||||||| ||||| || ||||| || |||| | || | || ||| || Sbjct 741763 AATCCGGATGAAGCTGTTGCCTATGGTGCGGCTGTTCAGGCAGGTGTTCTTTCTGGTGAA 741704 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || | | | | ||||| | |||| || | ||| | | || ||| | Sbjct 741703 GAAGGTG------TTGAGGACATTGTGTTGATTGATGTTAACCCATTGACTTTGGGTATC 741650 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTT-ATTGACAGAAATACTCCTATCCCATGCAA 475971 || || ||| || | ||||| || ||| ||| | |||||||| ||||| ||| ||| Sbjct 741649 GAGACCTCTGGTGGTGTCATGAC-AACCTTGATTAAGAGAAATACACCTATTCCAACCAA 741591 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 || || | | || || ||| | |||||| || |||| || |||||| | | Sbjct 741590 GAAGTCCCAGATTTTCTCTACTGCTGTTGATAACCAGCCAACAGTTCTCATCCAGGTTTA 741531 Query 476032 TGAAGGTGAAAGAAAATT--CACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 ||| || |||||| | | ||| |||| | ||| | || | || | ||| | Sbjct 741530 TGAGGGAGAAAGAGCAATGGCACGTAAGA--ACAACTTGTTGGGTAAGTTCGAGCTTAAC 741473 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||| ||||| ||||| |||||||| || || || || ||| | | || | Sbjct 741472 GGTATTCCTCCGGCTCCAAGAGGCGTTCCTCAGATCGAGGTGACCTTTACTTTGGACTCC 741413 Query 476150 AATGGTATTCTTAATGTT 476167 ||||| ||| | || ||| Sbjct 741412 AATGGAATTTTGAAGGTT 741395 >seq12 Length=1682134 Score = 107 bits (118), Expect = 1e-17 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 480608 AGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAAT 480667 ||||||| ||| || | ||||| |||||||| || | | || ||||| || || || Sbjct 1445861 AGTTCTGCCATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGAT 1445920 Query 480668 TCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTT 480726 ||| ||||||||||| |||||||| |||||| ||||| || || | | | | | Sbjct 1445921 TCCCTCCTTGTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTC 1445980 Query 480727 CAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||| ||||| |||||||| | |||||||||||||||||| Sbjct 1445981 CAA-GGTGATAGTCTTACCGGTCAAAGTCTTAACGAAAATTTG 1446022 >seq7 Length=196898 Score = 104 bits (114), Expect = 2e-16 Identities = 392/603 (65%), Gaps = 19/603 (3%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG--TTTGGCAAAATGGTA 474386 |||||||| ||||| || || || || ||| ||||| | | |||| ||| | | Sbjct 83662 GCAATTGGAATTGACTTGGGTACCACCTACTCCTGTGTTGGTCACTTTGCCAAC--GACA 83605 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446 ||| || || |||||||||||||| |||| ||||| || || || || ||| | || | Sbjct 83604 GAGTTGACATCATTGCCAATGACCAGGGTAGCAGAACCACGCCTTCTTACGTTGCCTTCA 83545 Query 474447 CTGAAACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 | || || || | || | || || || ||||| || | || ||||| || ||| | Sbjct 83544 CCGATACCGAGAGAT-TGATCGGTGAGGCTGCCAAGAACCAGGCTGCCATGAACCCTACT 83486 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || ||| | ||||| ||||| ||| | |||||| | || || || | || || Sbjct 83485 AACACTGTCTTTGACGCTAAGAGACTTATTGGTAGAAAGTTCACCGACCCAGAGGTTCAG 83426 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623 ||||||| || ||||| || |||||||| | | || || ||| | || || Sbjct 83425 AGTGATATGAAGCACTGGCCATTCAAGGTGATCGACTCCGAGGGAAAGCCAAAGATCCAG 83366 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | |||| | || || || || | | || || | |||| || |||||| Sbjct 83365 GTCGAGTACAAG--GGCGAGACCAAGGTCCTCACTCCAGAGGAGGTTTCCTCTATGGTTC 83308 Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTA 474742 | ||| |||| | | || || | | | |||| || || || | || || || Sbjct 83307 TCAGCAAGATGAGAGAGACTGCCGAAGCCT-TTTTGGGCAGCAAGGTTAAGGACGCTGTT 83249 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 |||| || ||||| || || ||||| || || | || || || || ||||| || | Sbjct 83248 GTTACCGTCCCAGCCTACTTCAATGACTCCCAGAGACAGGCTACCAAGGATGCCGGTACC 83189 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||| | || || | | || || || || ||||| || ||||| |||| || Sbjct 83188 ATTGCCGGTATGAACGTGATGAGAATCATCAACGAGCCAACCGCTGCCGCTATTGCCTAC 83129 Query 474863 GGTCTTGATAAGAATTCTGA--CAAAGAAGTAAATGTTTTAATCTTTGATT---GTGGAG 474917 ||| | |||||||| | || ||||| || || || ||||| |||| |||||| Sbjct 83128 GGTTTGGATAAGAAGACCGAGGGTGAGAAG--AACGTCTTGATCTTCGATTTGGGTGGAG 83071 Query 474918 GTA 474920 ||| Sbjct 83070 GTA 83068 >seq23 Length=1344041 Score = 86.0 bits (94), Expect = 4e-11 Identities = 206/303 (68%), Gaps = 9/303 (3%) Strand=Plus/Minus Query 355401 TGTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAA--TCTTGTACCAAAT 355458 |||||||||||| | |||| ||| ||| || ||||| | || ||||| |||||| Sbjct 685854 TGTGAAGATATACCTTGCAGCTGCTGCATCCTTACCTCC--TGAAGCTCTTGAACCAAAA 685797 Query 355459 TGACCAT-TGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCCATTTT 355517 ||||| |||||| || || || ||||||||| ||||||| ||| ||| || | Sbjct 685796 CCACCATGTGGGAAC-AACAAGTTGATGTTGTTAGATCCAACAAAATCTTGAGCAAGAGA 685738 Query 355518 TATTATAGTTTCAGTCATTGACTGTTCTCCATGATGATATTTAGTTCTTTTCGAAACTGC 355577 || || |||| | ||| ||| || ||||||||||| ||| || | || Sbjct 685737 AATAATGGTTTGAATCAATGATGCATCACCATGATGATAACCAGTATGTTCTGCAATATA 685678 Query 355578 ACCTTGTAATTCAGATACTTTAATTTCTTCTTTATAAATACCTTCTTCCTCTGAACCATA 355637 ||||| ||||| || ||||| || || | ||||| | |||| | | ||| | Sbjct 685677 ACCTTCTAATTGGGAAACTTTTATCTC-ACCCCGTAAATTTC-TCTT-ATAGCATCCAAA 685621 Query 355638 CAATACTTTTCTTTGAGATGGTTTAAGACCGTCAGCTATGTTAGGTATTGATCTCATATT 355697 ||| | ||||||||||||||| || | ||| || ||| ||| ||||| | || || Sbjct 685620 CAAAATTTTTCTTTGAGATGGCTTGAAACCATCCACTACCGAAGGAATTGAACGAATGTT 685561 Query 355698 ATC 355700 ||| Sbjct 685560 ATC 685558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177998944144