Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq23 131 2e-25 >seq23 Length=1344041 Score = 131 bits (144), Expect = 2e-25 Identities = 571/884 (65%), Gaps = 60/884 (7%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | ||||| |||||||| ||||| || |||| || || | ||| || || ||| Sbjct 978478 ACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAAT 978419 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT-AATCTATCTGCTAC 17997 ||||| ||| || ||| || || | ||| || |||| || || || || || Sbjct 978418 GGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCG-ATAAGCAACCTGTCGGC-AC 978361 Query 17998 A-AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAA--GGTAG 18054 | || || || || || | ||||| |||| | |||||||| |||| |||| || || Sbjct 978360 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAA--GAAACTGGAAG 978303 Query 18055 AGCATCAATA-ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT------GTTTA 18107 ||| || | | ||| | |||||| || | ||||| ||| | || || | | | Sbjct 978302 AGCGTCTCTCCAGAAAGT-TTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAA 978244 Query 18108 TTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAAT 18167 | ||| || | ||| || | | |||| | | || | || ||||||| Sbjct 978243 TGACCTTACTTGGTGG------ATGCTTCAAGTGAG---AGAACAAAAGGCATGCAAAAT 978193 Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTA 18227 | || |||| ||| ||||||||| | || | |||||| ||||| | || ||||| | Sbjct 978192 CGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCA 978133 Query 18228 TACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCA 18286 |||||| || || | ||| || || || || |||| | | ||| || || | ||| ||| Sbjct 978132 AACCTCTCTTCTTCAACCAGAAGATGGAGGC-AAACGATCCAGAGAAAAACACACCTTCA 978074 Query 18287 ACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTAT--TTATTGCTCAGTATCCAT 18343 | | || || || | ||||| |||||| | | | || | |||| | ||||||| Sbjct 978073 ATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTT---TATCCAT 978017 Query 18344 TTTTGTGCCCAT-------TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 | |||||| ||||||| ||| || || | | || ||||| Sbjct 978016 CTCAAAGCCCATAAAGCCTTCTCCTTA-------ATAGGTGGAATTGTATGGATGGCATT 977964 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 ||||| | || ||||| || | ||||| || ||||| || | ||||| | Sbjct 977963 GAACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGT 977904 Query 18457 TTCAGAATGTATGCTTTC---CATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 ||||| || ||| | || |||| ||||| |||| ||| || | ||| ||||| || Sbjct 977903 CTCAGAGTGGATGTTCTCAACCATA---ATCTGGAAACCATAGAAGGCTCTTGCCTCAGG 977847 Query 18514 ATATTGAATCTCGCT--ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 | || | || ||| ||||| | | | | |||||||||||| || ||||| || | | Sbjct 977846 TAACTGCACCT-GCTTCATAAAGT-TCTGTGCCAAATTCTCATCGACAATACCATCTGAA 977789 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG--- 18628 | || || || ||||| ||| ||||| | | | ||||| | || | ||| Sbjct 977788 GCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCA 977729 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| || | ||| ||||| ||||| | || || | ||||| ||||| | ||| Sbjct 977728 TTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCG 977669 Query 18689 GCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 |||| |||||||||| | ||||| || | || ||||| || Sbjct 977668 GCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAA 977625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871743844800