Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10-
07] 28 sequences; 12,502,959 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq23 131 2e-25
>seq23
Length=1344041
Score = 131 bits (144), Expect = 2e-25
Identities = 571/884 (65%), Gaps = 60/884 (7%)
Strand=Plus/Minus
Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938
||| | ||||| |||||||| ||||| || |||| || || | ||| || || |||
Sbjct 978478 ACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAAT 978419
Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT-AATCTATCTGCTAC 17997
||||| ||| || ||| || || | ||| || |||| || || || || ||
Sbjct 978418 GGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCG-ATAAGCAACCTGTCGGC-AC 978361
Query 17998 A-AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAA--GGTAG 18054
| || || || || || | ||||| |||| | |||||||| |||| |||| || ||
Sbjct 978360 AGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAA--GAAACTGGAAG 978303
Query 18055 AGCATCAATA-ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT------GTTTA 18107
||| || | | ||| | |||||| || | ||||| ||| | || || | | |
Sbjct 978302 AGCGTCTCTCCAGAAAGT-TTTCTCAATATTAACAGCCTCGGTCATGATTCTCTTGATAA 978244
Query 18108 TTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAAT 18167
| ||| || | ||| || | | |||| | | || | || |||||||
Sbjct 978243 TGACCTTACTTGGTGG------ATGCTTCAAGTGAG---AGAACAAAAGGCATGCAAAAT 978193
Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTA 18227
| || |||| ||| ||||||||| | || | |||||| ||||| | || ||||| |
Sbjct 978192 CGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCA 978133
Query 18228 TACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCA 18286
|||||| || || | ||| || || || || |||| | | ||| || || | ||| |||
Sbjct 978132 AACCTCTCTTCTTCAACCAGAAGATGGAGGC-AAACGATCCAGAGAAAAACACACCTTCA 978074
Query 18287 ACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTAT--TTATTGCTCAGTATCCAT 18343
| | || || || | ||||| |||||| | | | || | |||| | |||||||
Sbjct 978073 ATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATCATCATTGTT---TATCCAT 978017
Query 18344 TTTTGTGCCCAT-------TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396
| |||||| ||||||| ||| || || | | || |||||
Sbjct 978016 CTCAAAGCCCATAAAGCCTTCTCCTTA-------ATAGGTGGAATTGTATGGATGGCATT 977964
Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456
||||| | || ||||| || | ||||| || ||||| || | ||||| |
Sbjct 977963 GAACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAGT 977904
Query 18457 TTCAGAATGTATGCTTTC---CATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513
||||| || ||| | || |||| ||||| |||| ||| || | ||| ||||| ||
Sbjct 977903 CTCAGAGTGGATGTTCTCAACCATA---ATCTGGAAACCATAGAAGGCTCTTGCCTCAGG 977847
Query 18514 ATATTGAATCTCGCT--ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571
| || | || ||| ||||| | | | | |||||||||||| || ||||| || | |
Sbjct 977846 TAACTGCACCT-GCTTCATAAAGT-TCTGTGCCAAATTCTCATCGACAATACCATCTGAA 977789
Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG--- 18628
| || || || ||||| ||| ||||| | | | ||||| | || | |||
Sbjct 977788 GCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCA 977729
Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688
||||| || | ||| ||||| ||||| | || || | ||||| ||||| | |||
Sbjct 977728 TTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCG 977669
Query 18689 GCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732
|||| |||||||||| | ||||| || | || ||||| ||
Sbjct 977668 GCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAA 977625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871743844800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |