Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12 324 2e-83 seq23 226 4e-54 >seq12 Length=1682134 Score = 324 bits (358), Expect = 2e-83 Identities = 1344/2096 (64%), Gaps = 37/2096 (2%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 |||||||| ||||||||||| ||||||| || |||| || || || ||||| Sbjct 1114882 TGTACGTAAGTAGTACATACCTGTTTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGA 1114941 Query 68463 TGTTAGTTTGGAATAACTTGGAT-CGGCTATATGAATATTCATCGATTGACTTTGATCGA 68521 || | ||| | |||| | || | ||| || ||||| |||||| || || Sbjct 1114942 AGTCAATTTACCCATAGTTGGTGACTGCAA-ATGGATGTTCATAGATTGAGACTGGCAGA 1115000 Query 68522 TGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAG 68581 || | || || ||||| || ||||| | || | | ||| |||| ||| ||||||| | Sbjct 1115001 TGTATGCGCCCCTATCAGCAGCCATATCGATGACAGACTTCTGAGAAATCTCCCAAACTG 1115060 Query 68582 TCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTA---TTTTGAATGGATCCACCAT 68638 || | | | || ||||| | ||| |||| | | | || ||||| || || | Sbjct 1115061 TCCTGTACAACTTCTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGT 1115120 Query 68639 CGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAA 68698 || || || | ||||| || |||| ||||| | | | || | | | |||| | Sbjct 1115121 CGTGAATGATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCA 1115180 Query 68699 GGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTAC 68758 | | |||||||| || || ||||| |||| | ||||| | || || ||| Sbjct 1115181 ACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTAG 1115240 Query 68759 TGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCA 68818 ||| ||||||| | | |||| |||| |||| ||| || | ||| || ||||| |||| Sbjct 1115241 AGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCA 1115300 Query 68819 TAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATT-TTATCTTTTAGATGT 68877 ||||||||||||| | | |||||||||||| || || | | ||| | || ||| Sbjct 1115301 TAGGTGCCACCAAAAGAGAGTTTCTAAGACCA-GTCTTGGCAATCTTAGCCTTCAGAGTA 1115359 Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTA 68937 | ||| ||||| ||||| | || ||||| | ||| ||||||||||| || || Sbjct 1115360 TCCCAGTCCCACAGATCCGTAGGCTTTTTGTTCCACATATCATATTGTAGAATACCCTTT 1115419 Query 68938 CTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTT 68997 || || || | |||||| | ||||| || || | |||| || | | Sbjct 1115420 GAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGAT 1115479 Query 68998 GCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT 69057 |||| |||||| ||| ||| | || || || |||| | || || || |||| ||| Sbjct 1115480 TCCTCCAATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGCATCT 1115539 Query 69058 AGACTATCGAATGGATAATGTAA--AAGAATAAATGCATCTGCCAATCCCTGAACCCCAA 69115 ||| || || || || | ||| | ||| || | ||| || | ||||| | |||| Sbjct 1115540 GGACAGTCAAAAGG-TAGTCTAAGCATGAAGAAG-GTATCAGCAAGACCCTGGATACCAA 1115597 Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 | | |||||||| | |||| | || || | || || |||| ||||| ||||| Sbjct 1115598 GAGCAATAGGTCTGTTTCTCATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATTTC 1115657 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTT---AGTTTGA 69232 | || |||| || | || ||| || |||||| | || | | | || Sbjct 1115658 TGTCAATAACACGGTTTAAGTTACGGGTAACAACTTTAGTAA--TCTTGTGCAACTTCTC 1115715 Query 69233 GAA----AATCA--AATCGTCCATCTATAACA-AACATATTCAGTGCTACAGATGCTAGA 69285 ||| || || ||| ||| | | || |||| | ||| ||| ||| | | Sbjct 1115716 GAAGTTGAACCAGCAATGATCCTCATCTGACTCAACAAAGGCAGGCAAACAAATGTTGGC 1115775 Query 69286 ----TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATT 69341 ||||| || | ||||||| | | | || | | | ||| || | || Sbjct 1115776 CAAGTTACACACACCAACCTCATCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTT 1115835 Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401 | ||||||| || |||| || | ||||||||||||| | ||||| || |||||||| Sbjct 1115836 CGAAGATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTA 1115895 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT 69461 | || || || ||||||||||| |||||| || | ||| | ||| | | Sbjct 1115896 GATCATGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTG 1115955 Query 69462 AGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCG 69519 ||| || | | | |||| | | | || ||||| || || | || || | ||| Sbjct 1115956 AGCCTTCACT--GTTCTTCTTCCACGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCG 1116013 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || || ||||||| | || || ||| ||| | | ||||| |||| Sbjct 1116014 AACTCGTCACCGTAAACATCTGAGAGACCTGGTGCCTCAGAAGGAGAGAACAATGTCCAC 1116073 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 || | || || || |||||||||| ||| ||||||||||||||| ||| | | Sbjct 1116074 TTGTCGTTGCTCTCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAA 1116133 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 || | | | | | || || || || ||| ||| | | ||||| ||| || | ||| Sbjct 1116134 TCACGTGCACGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATA 1116193 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 |||| |||||| || || | || || || ||| | || |||| || || || || ||| Sbjct 1116194 TCAGCATGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGA 1116253 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | ||||| ||||| | || | || | | ||||||||| ||||| || ||| || Sbjct 1116254 TCCACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTA 1116313 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 ||||| || || | |||||| || | | ||||| || ||| ||||| || Sbjct 1116314 CCATTAGTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATA 1116373 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || || || | ||||| || | |||||| ||||||| || || || ||||| || || Sbjct 1116374 CCACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATA 1116433 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 |||||| |||| || | || || ||||| ||| | || ||| || ||| Sbjct 1116434 GAGTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCA 1116493 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG-TTTC 70058 || || || || || ||||| || ||||| || | | || | || | |||| || | Sbjct 1116494 TTGAACAACGTTGGTGATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCC 1116553 Query 70059 AATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 || | || | ||||| ||| |||||| || | || || | ||| | | || | Sbjct 1116554 AACACCTTA-GGAATATCATCAC-CATGAATACCGACGGCCACTCTCATAAGAAGGTGTT 1116611 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | |||| ||| | ||| ||| ||| ||||||| || || ||||| ||| || | Sbjct 1116612 GTGGTCTTTCAGCAACCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGA 1116671 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCT 70237 | ||||| |||||||| ||||| | |||||| |||| | || || | | ||||| Sbjct 1116672 AACCAAAGTAGTTGTAACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCT 1116731 Query 70238 TATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACCATTTT 70297 ||| | |||| || | ||| | || || || ||||| || | | Sbjct 1116732 TATGCTCCATAACAATCTTATAAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCT 1116791 Query 70298 TAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCT 70357 | ||||| |||||| ||| ||| || || |||||| || | || || || | || Sbjct 1116792 TTGGATTGTAGTAGTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCT 1116851 Query 70358 TGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAG 70417 |||| |||||||| || || | ||| || || | | |||||||||| ||||| ||| | Sbjct 1116852 TGTGCAAATTTGAGATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGG 1116911 Query 70418 TACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCC 70472 | || ||| ||||| |||| |||| || | || || || || || ||||| || Sbjct 1116912 T-CATGTATGCTGCAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACC 1116966 >seq23 Length=1344041 Score = 226 bits (250), Expect = 4e-54 Identities = 602/909 (66%), Gaps = 17/909 (2%) Strand=Plus/Minus Query 39303 CTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAG 39362 || |||| | |||||| || || ||||| || ||| | ||||| || ||||||| Sbjct 978515 CTCCTTG-GCCATAACACCGGCCTTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAG 978457 Query 39363 TTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttt 39422 | || || |||| || |||||||||||||| || || ||||| || | || || | Sbjct 978456 TCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTTGTGACGTTGTAAACCT 978397 Query 39423 ttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCA 39482 | | |||| ||| | || ||| || || ||| || || | ||| ||||| Sbjct 978396 TCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCAACGTACTGAGCCATCA 978337 Query 39483 TTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT-AGAAACTCTTTTTCG 39541 | || | ||||| || | | |||||| ||||| || | ||||| | ||| || Sbjct 978336 TATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTCCAGAAAGT-TTTCTCA 978278 Query 39542 ATGTCTACGGCCTCTGTTATTATCGA--TGTTACT-ACCTCATCACTCGGTGGATGCAAT 39598 || | || ||||| || || || || || | |||| | || ||||||||| Sbjct 978277 ATATTAACAGCCTCGGTCATGATTCTCTTGATAATGACCTTA---CTTGGTGGATGCTTC 978221 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 || || |||| | ||| || || || |||||| ||||||||||| | || | Sbjct 978220 AAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTCATCTCTGCAGATAAGC 978161 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 |||||||| || || || || ||||| | ||| | ||| || | ||| || |||| ||| Sbjct 978160 TCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCA 978101 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGT-- 39776 || |||||||| || || | ||||| | || ||||| ||||| | |||||| | | Sbjct 978100 AACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAACCAATCTCTCAGCATAC 978041 Query 39777 -AACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGC 39835 || |||||| | |||||| || ||||| ||| |||| ||| | | || Sbjct 978040 AAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTTCTCCTTAATAGGTGGA 977981 Query 39836 ATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCT 39895 ||||| | || ||||| || | || | || | | || | | ||| || || Sbjct 977980 ATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTCAGTGATATAGGTCTCG 977921 Query 39896 ATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 || || || ||| | || || |||||||| |||| | ||||| || || || || Sbjct 977920 ATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAG 977861 Query 39956 CATCTTGCTTCAGTAATTTGTACCT-CTGAACAAAATCTTTCCGCCAAATTTTCATTCAC 40014 |||||| |||| | || |||| || | ||| | | | |||||||| |||| || Sbjct 977860 GCTCTTGCCTCAGGTAACTGCACCTGCTTCATAAAGT-TCTGTGCCAAATTCTCATCGAC 977802 Query 40015 TATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGG 40074 || ||||| ||||||||| || ||||| ||| | || || ||| | |||| || Sbjct 977801 AATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGC 977742 Query 40075 TGTCAATTT---ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131 ||| || ||||||||| | | ||| ||||| | ||| | || || || ||||| Sbjct 977741 ATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCA 977682 Query 40132 AAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || || ||||| ||||| |||||||| | |||||||||| || || || || || || Sbjct 977681 GAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAACAT 977622 Query 40192 AACAAATCT 40200 || ||||| Sbjct 977621 CACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908559581920