Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq12 219 5e-52 seq22 134 2e-26 seq25 87.8 2e-12 >seq12 Length=1682134 Score = 219 bits (242), Expect = 5e-52 Identities = 1120/1756 (64%), Gaps = 61/1756 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || || || | || | ||||| | || | ||||| |||| | || Sbjct 1114892 TAGTACATACCTGTTTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 1114951 Query 110429 GACATCGTTGG--ACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA-GCGC 110485 ||| ||||| ||| ||| || ||||||| |||| ||| ||| | |||| Sbjct 1114952 CCCATAGTTGGTGACTGCAAATG--GATGTTCATAGATTGAGACTGGCAGATGTATGCGC 1115009 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 ||| | || |||||||| |||||| |||| ||| ||||||||||| | || Sbjct 1115010 CCCTATCA-GCAGCCATATCGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTAC 1115068 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 | |||||||| | ||| || | | || | ||||| || ||||| | | | Sbjct 1115069 AACTTCTTGATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTGTCGTGAATG 1115128 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 |||| | |||||| | | | ||| | || || | | || || | | | || Sbjct 1115129 ATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCTCAACATGTAA 1115188 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 || || || || ||||| || || ||||||| | |||||||| | ||| || Sbjct 1115189 GGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAAT 1115248 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 ||||| || ||||| |||| ||||| || || | || || || || ||||| |||||| Sbjct 1115249 GGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGGCATAGGTGCC 1115308 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | ||||||| ||| | |||||| ||| || |||| ||| ||||||||| Sbjct 1115309 ACCAAAAGAGAGTTTCTAAGACCAGTCTTGGCAATCTTAGCCTTCAGAGTATCCCAGTCC 1115368 Query 110846 TAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGG 110903 | || | | || || |||| |||| ||| | || || | || | || || | Sbjct 1115369 CACA-GATCCGTAGGCTTTTTGTTCC-ACATATCATATTGTAGAATACCCTTTGAAGCTG 1115426 Query 110904 GAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCA 110963 |||| || ||| | || | ||| | ||| | | |||| | | | |||||| Sbjct 1115427 GAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGGATTCCTCCA 1115486 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA- 111022 | |||||||||| ||| ||||| || || || | |||| || ||||| | Sbjct 1115487 ATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGC---ATCTGGAC 1115543 Query 111023 --TCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||||| | |||| | || | || ||| || ||||| || | ||| | | || Sbjct 1115544 AGTCAAAAG-GTAGTCTAAGCATGAAGAAGGTATCAGCAAGACCCTGGATACCAAGAGCA 1115602 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTG 111136 |||||||||| || ||| || || || || || |||| || ||||| |||||||| Sbjct 1115603 ATAGGTCTGTTTCTCATGTTGGAGTTACGGGC---CTCAGGAACTGGATAGTAATTTCTG 1115659 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 ||||| || ||||||| || |||||||| || || || | || | || || | Sbjct 1115660 TCAATAACACGGTTTAAGTTACGGGTAACAACTTTAGTAATCTTGTGCAACTTCTCGAAG 1115719 Query 111197 TCAAAAGTGCGAGTCTCTTCAT-TGACATA-CTTTGGAAGGG---CGATTGATG-CCAAA 111250 | || || | || |||| |||| | | || ||| | | || || |||| Sbjct 1115720 TTGAACCAGCAATGATCCTCATCTGACTCAACAAAGGCAGGCAAACAAATGTTGGCCAAG 1115779 Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 || || ||| | |||||| | | |||||| | || || || ||||| ||| Sbjct 1115780 TTACACACACCAACCTCATCTGGAGAGGAGTACTCGACAACCTCACAGCACAAGTTCGAA 1115839 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || || || ||||| ||||| || |||||||| | || || ||||||||||||| | Sbjct 1115840 GATTTGATGGTACCCAAGTTCTTCTGATTACTCTTTCTATTACAAGCATCCTTGTAGATC 1115899 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGC 111429 ||| | || || || || || ||||| | | | ||| | ||| ||| || | | | Sbjct 1115900 ATGAAAGGTGTACCAGTTTCTGTCTGAGCCTCCAAAATCTGGTACCATAACTTCTGAGCC 1115959 Query 111430 TGGTACAATGGCGTTGGCCC--GTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 | || || || || |||| || |||||| ||||| | || ||| Sbjct 1115960 TT---CACTGTTCTTCTTCCACGTCCTTCTTTCTCGTAACGAGTGTACAATTTCTCGAAC 1116016 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA-AGAGACCATTG 111546 || ||||| | || |||||||||||||||| ||||| ||||| || || Sbjct 1116017 TCGTCACCGTAAACATCTGAGAGACCTGGTGCCT--------CAGAAGGAGAGAACAATG 1116068 Query 111547 ACCACCT-TC------CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | || ||| || |||||||| || | ||||||||||| || | || || Sbjct 1116069 TCCACTTGTCGTTGCTCTCCACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAA 1116128 Query 111600 AGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 | | ||| | | || ||| ||| || | ||| || || || | || | || || Sbjct 1116129 ACAAATCACGTGCA-CGAATCTCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCG 1116187 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCC 111714 | |||||| || ||||| ||||| | || | || || | || || | | || Sbjct 1116188 AAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCAATGGCACCTGGTCTCTTG-TTACC 1116246 Query 111715 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATC 111774 | |||||| ||||| | || || ||| || || |||| ||| ||||| ||||| | Sbjct 1116247 ACCTTGATCCACATATCTAGCAGTACTGTTGAACACACGAACCATCGGAATTATACCGTT 1116306 Query 111775 TGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 111834 ||| |||||| || || |||| || | ||| | | | || ||||| | Sbjct 1116307 GGATGTACCATTAGTACCGGCAATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAG 1116366 Query 111835 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 111894 |||||||| ||||| ||| || || ||||||| | | ||| | |||||||| Sbjct 1116367 ACCAATACCACCAGCAGTCTTAGAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACC 1116426 Query 111895 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 111954 | || ||||| || || | || | | |||||| |||||||| || | ||| || Sbjct 1116427 TTCAATAGAGTCATCTTTCATTGCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGT 1116486 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGT 112013 |||||||||||| | ||||||| ||| || |||| || || | |||||| ||| | Sbjct 1116487 ACCAGCATTGAACAACGTTGGTGATGCATGTGTGAA-GTATCTCTTTGACATCAAGTCAT 1116545 Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 ||| ||||| || | ||| || || || || || |||| || || | ||| | | Sbjct 1116546 ATGATTCCAACACCTTAGGAATATCATCACCATGAATACCGACGGCCACTCTCATAAGAA 1116605 Query 112074 TGTACTGTGGGGTTTC 112089 || ||||| |||| Sbjct 1116606 GGTGTTGTGGTCTTTC 1116621 >seq22 Length=1510904 Score = 134 bits (148), Expect = 2e-26 Identities = 300/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| || || |||| ||||| || |||||| | || ||| || | ||||| Sbjct 295573 TTGCACACGGCGATCTCGTCCTTGGATGAGTACTCGACAACTTCGCAGCAGAGATTGGAC 295514 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 ||| || || || | ||||| || || |||| ||||||| |||||| || || Sbjct 295513 GACTTGATGGTTCCAAGGTTCTTCTGATTCGACTTCGCATTGCACGAATCCTTATAAAGG 295454 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCT 111430 | | | ||||| || ||||| ||||| || | ||||| || ||| || | | ||| Sbjct 295453 AGGAAAGGCGTTCCTGTCTCGGTCTGAGAATAAAGAATCCTCTCCCACACCTTGCGGGCC 295394 Query 111431 GGTACAA-TGGCGTTGGC-CCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 | ||| || ||| | ||| || || ||||||| |||||| |||| |||||||| Sbjct 295393 --TTCAACTGCCGTAGATACCGGCCTTCTTTTTCGTACTGTGTGTACAGGGATTCAAACT 295336 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC--CATTG 111546 | |||| ||| || || |||||||| ||| | |||||||||||| || Sbjct 295335 CGGGACCCCATTTGTCTGATAGTCCTGGTGC--TGTATCCTCAGAAAAGAGACTCCACAT 295278 Query 111547 ACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 111606 || | | || || ||| ||||||| ||||| |||||||||| | |||||||||| Sbjct 295277 CTCATCGTTCTTCACACGCCTCATGAACAGGTCCGGAATCCACAACGCATAAAAGAGATC 295218 Query 111607 TCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATAT 111665 || ||| || || | || ||||| || | | || ||||| |||| |||| Sbjct 295217 CCTTGCCCGCATTTCCTCCTTGCCGTGGTTCT-TCTTGAGGTCGAGGAATTCCAGAATAT 295159 Query 111666 CCGCGTGCCATGGCTCAAGATA 111687 |||| ||||| ||||||||||| Sbjct 295158 CCGCATGCCAGGGCTCAAGATA 295137 >seq25 Length=757050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| | || |||||| |||| || | || ||||||||||||||||| ||||| Sbjct 282258 TATGGAAGAGTGGCACCAAGATCTGGATTAGCGGTGAAGCATGGTATTCATACCGGTGCT 282317 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||| ||||| | ||||| | ||| ||||| || || || |||||||| | | || Sbjct 282318 GGTGTCATTGACTCAGACTACAGAGGAGAAGTTAAGGTTGTACTCTTCAACTTCAGCGAT 282377 Query 164724 AAAGACTTTGAG-GTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 164774 ||||| ||| || | || || ||| | || |||||||| | |||||| Sbjct 282378 AAAGA-TTTCAGCATTAACGCGGGTGATAGAATTGCACAACTCATTCTTGAG 282428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031780188800