Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-21 >seq12 Length=1682134 Score = 118 bits (130), Expect = 1e-21 Identities = 321/481 (67%), Gaps = 8/481 (2%) Strand=Plus/Minus Query 53249 TACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGG 53307 || ||||| ||| | || || ||||| || || || | ||||| ||||||| ||||| Sbjct 1116546 TATGACTTGATGT-CAAAGAGATACTTCACACATGCATCACCAACGTTGTTCAATGCTGG 1116488 Query 53308 TACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 ||| | |||||||||||| |||||| | || || ||||| |||||||| || || Sbjct 1116487 TACTCCACGCCCTCAGATGTCATCATGCTTCTTAGTTGCAATGAAAGATGACTCTATTGA 1116428 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 || |||||||| || | || ||||||| || || ||| | |||||||| || Sbjct 1116427 AGGTATCTACGATACTTTGAAACAGTGTGCTTTGATTTCTAAGACTGCTGGTGGTATTGG 1116368 Query 53428 TATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | | ||| | | | ||| | ||| | | || | || || || || || Sbjct 1116367 TCTTCACATTCAC-AACATTCGTTCCACTGGTTCGTATATTGCCGGTACTAATGGTACAT 1116309 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || || | || ||| | || || ||||||| || || | || || | || | Sbjct 1116308 CCAACGGTATAATTCCGATGGTTCGTGTGTTCAACAGTACTGCTAGATATGTGGATCAAG 1116249 Query 53547 GTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 ||||| ||| | | ||| | | || || || ||| | ||||| ||||| || || || Sbjct 1116248 GTGGTAACAAGAGACCAGGTGCCATT-GCTATTTACTTGGAGCCTTGGCATGCTGATATC 1116190 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCT 53664 | || ||| |||| | | |||||| ||| | || ||||| || ||| ||||| | Sbjct 1116189 TTCGACTTTATCGATATCAGAAAGAATCATGGTAAAGAGGAGATTCG-TGCACGTGATTT 1116131 Query 53665 GTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTG 53724 |||| ||||||| |||||||| || | || ||| | ||||||| |||| |||| Sbjct 1116130 GTTTCCAGCTCTTTGGATTCCAGATTTATTTATGAAGCGTGTGGAGAGCAACGACAAGTG 1116071 Query 53725 G 53725 | Sbjct 1116070 G 1116070 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||| || | ||| |||| || ||||||||| | |||||| | | || || ||| || Sbjct 1115078 TCAAGAAGTTGTACAGGACAGTTTGGGAGATTTCTCAGAAGTCTGTCATCGATATGGCTG 1115019 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 ||||| | || || |||||| |||||| || ||| |||||||| || || || Sbjct 1115018 CTGATAGGGGCGCATACATCTGCCAGTCTCAATCTATGAACATCCATTTGCAGTCACCAA 1114959 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| || |||| || ||||||||||| || ||||||||||| | || || |||| Sbjct 1114958 CTATGGGTAAATTGACTTCCATGCACTTTTATGGCTGGAAGAAGGGCTTGAAAACAGGTA 1114899 Query 55908 TGTACTA 55914 ||||||| Sbjct 1114898 TGTACTA 1114892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215808474400