Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12 156 5e-33 seq1 129 7e-25 >seq12 Length=1682134 Score = 156 bits (172), Expect = 5e-33 Identities = 520/801 (65%), Gaps = 21/801 (3%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 ||||||| | || |||||| || ||||| || || ||||||| ||| ||||| || Sbjct 1115811 ACTCGACAACCTCACAGCACAAGTTCGAAGATTTGATGGTACCCAAGTTCTTCTGATTAC 1115870 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| || ||||| ||||||||| |||| | || ||||| || || ||| | || Sbjct 1115871 TCTTTCTATTACAAGCATCCTTGTAGATCATGAAAGGTGTACCAGTTTCTGTCTGAGCCT 1115930 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCG 81123 | || || ||| | || | ||||| || | ||| | | | ||||| Sbjct 1115931 CCAAAATCTGGTACCATAACTTCTGAGCCTTCACTGTTCTTCTTCC---ACGT-CCTTCT 1115986 Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGG 81183 | | || | ||| || ||||||| | |||||| || || | ||| |||| Sbjct 1115987 TTCTCGTAACGAGTGTACAATTTCTCGAACTCGTCACCGTAAACATCTGAGAGACCTGGT 1116046 Query 81184 CACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCG 81243 ||| ||| | | || ||| | | || | |||| ||| |||||| || Sbjct 1116047 GCCTCAGAAGGAGAGAACAATGTCCACTTGTCGTTGCTCTCCACACGCTTCATAAATAAA 1116106 Query 81244 TCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTT 81302 || || ||||| || || | |||| || || ||| || |||||| | ||| || || Sbjct 1116107 TCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCA-CGAATCTCCTCTTTACCATGATT 1116165 Query 81303 GAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGAT 81362 | | |||| |||||| | ||| || |||||||| ||||||| || | || || Sbjct 1116166 CTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGCTCCAAGTAAATAGCAAT 1116225 Query 81363 CGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416 | || |||| || |||| || | || || | ||||| ||| || || Sbjct 1116226 GGCACCTGGTCTCTTGTTAC---CACCTTGATCCACATATCTAGCAGTACTGTTGAACAC 1116282 Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTT 81476 ||| | ||| || || ||||| | || ||| || ||||| | ||| ||| || | Sbjct 1116283 ACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCAATATACGAACCAGT 1116342 Query 81477 GGCGCGCACCTTGCTGATTGA-AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 || || | ||| ||| || |||||| || ||||| | ||| |||||| ||||| Sbjct 1116343 GGAACGAATGTTG-TGAATGTGAAGACCAATACCACCAGCAGTCTTAGAAATCAAAGCAC 1116401 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || | |||| || || || || || || || || | |||||| ||| ||||| | Sbjct 1116402 ACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATTGCAACTAAGAAGC 1116461 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 | |||||||||||||| | | || |||||||||| ||||| | || || ||| Sbjct 1116462 ATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGTGATGCATGTGTGA 1116521 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAA 81715 | || | |||||||||| |||||| | |||| || |||||||| ||||| |||| Sbjct 1116522 AGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATATCATCACCATGAA 1116581 Query 81716 TACCGATAGCTACACGCATAA 81736 |||||| || || | ||||| Sbjct 1116582 TACCGACGGCCACTCTCATAA 1116602 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27388 GCCAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACT 27447 ||| || || ||| | ||||||||| || || ||||| | ||||| |||||||| || Sbjct 1446043 GCCCGATATCTTATCAAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACTATCACC 1445984 Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507 | ||||| ||||| || | ||||| ||| | ||| || || || ||||||||| Sbjct 1445983 TTGGAGGTGGAGTCTTCCGACACCATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAG 1445924 Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || ||||| |||||| | | || |||||||||||||| | ||||||| | Sbjct 1445923 GGAATCCCACCAGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCAGA 1445864 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | | ||||| || |||| ||||| || |||||||| | |||||| Sbjct 1445863 ACTTTGTCGGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCTTG 1445813 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 |||||||| || || || | ||||||||||||||| || | |||||| ||| | | || Sbjct 1114892 TAGTACATACCTGTTTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGAAGTCAATTTA 1114951 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | || || || || |||||||| ||| |||||||| |||||| | || || Sbjct 1114952 CCCATAGTTGGTGACTGCAAATGGATGTTCATAGATTGAGACTGGCAGATGTATGCGCCC 1115011 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACACC 80226 | ||| || ||||| || || | ||||| || | ||| ||||| ||||| | |||| | Sbjct 1115012 CTATCAGCAGCCATATCGATGACAGACTTCTGAGAAATCTCCCAAACTGTCCTGTACAAC 1115071 Query 80227 TT 80228 || Sbjct 1115072 TT 1115073 >seq1 Length=1824870 Score = 129 bits (142), Expect = 7e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | || || |||||||| || | ||||| ||||| Sbjct 737925 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 737984 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| ||| | ||| || || ||||| |||||||||||||| || || || Sbjct 737985 CGATACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATTCCACCTGATCA 738044 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || |||||||||||||| | ||||||| | | || | | ||||| || Sbjct 738045 ACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTAGAACTTTGTCTGACTACAA 738104 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || |||||||| |||||||| | |||||| Sbjct 738105 CATTCAGAAGGAATCTACTCTTCACTTGGTCTTG 738138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310200391360