Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12 138 3e-27 seq1 134 3e-26 >seq12 Length=1682134 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| ||||| || |||||||| || |||| | || || || Sbjct 1445810 TCTCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 1445869 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| |||||| || || ||||| | | || || || || || | ||| ||||| Sbjct 1445870 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATTCCCTCCTT 1445929 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||||||||| || || || || |||||||| || || ||||| | ||||| Sbjct 1445930 GTCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCCAAGGTGAT 1445989 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | |||||||| Sbjct 1445990 AGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 1446028 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||||||||||||||||||||| || || |||||| | ||||||| ||| | ||| | Sbjct 1658894 CTTCCAAAGAAGCACGGAAGAGGTGGTCAGTCTGCTGTTCGTTTTGCCAGATTAAGAATG 1658835 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTT---TTATC 139923 || ||||| ||||| || | ||||| ||||| ||| || | ||| || ||| | Sbjct 1658834 GAGAAGAGACACAATTATATTAGAAAGGTTGCTGAGGTTGCCGTCCAGAATTTCATTACC 1658775 Query 139924 AAAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 || || | |||| || | ||| | ||||||||||||| || || ||||||| Sbjct 1658774 AACGATA--AAGT-CAACGTCGCAGGTTTAATTTTGGCAGGTTCAGCTGATTTCAAGA 1658720 >seq1 Length=1824870 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| || || || || ||||| || || | | || || || Sbjct 738141 TCTCAAGACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTACC 738082 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| |||||| || || ||||| | | ||||| ||||| |||| ||| ||||| Sbjct 738081 ATCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGATCAGGTGGAATTCCCTCCTT 738022 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||||| || || || || ||||| || || || ||||| | ||||| Sbjct 738021 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTATCGGAAGACTCCACCTCCAAGGTGAT 737962 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| | ||||| || || | |||||||| Sbjct 737961 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 737923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151584154220