Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq23 179 3e-40 >seq23 Length=1344041 Score = 179 bits (198), Expect = 3e-40 Identities = 581/894 (65%), Gaps = 25/894 (3%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||||| |||| ||| || ||||||||||| || || | || || |||||| Sbjct 978493 TTCTGGTAGTCGGAAACTCTCTTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTT 978434 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| || || || ||||| || |||||||| || || || | || | |||| Sbjct 978433 TCCATGAAGTCGAATGGATTTGTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGC 978374 Query 4377 AATCGGTCAGCTACA-AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 || | ||| || ||| || || | ||||| ||| | ||| |||| || || | ||| Sbjct 978373 AACCTGTCGGC-ACAGAACTCAACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAA 978315 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 || || || |||| | || | || || || ||| | || || || || || || Sbjct 978314 AGAAACTGGAAGAGCGTCTCTCCAGAAAGTTTTCTCAATATTAACAGCCTCGGTCATGAT 978255 Query 4496 ATCTTTT-ATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 ||| || || | | ||| |||| || |||| ||||| | || |||| Sbjct 978254 -TCTCTTGATAATGACCTTACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAA 978196 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 |||| ||| | ||| || ||||||| || || |||||||| ||||| | || |||| Sbjct 978195 AATCGGTATGTAGACCCTCATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCA 978136 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | ||||||||||| || | ||| || || | |||||| || ||||| || || | |||| Sbjct 978135 TCAAACCTCTCTTCTTCAACCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTT 978076 Query 4675 CTACGGCGGCAAACGCTACTAA----TCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 | | ||| ||||| || || || || | | | || | | | ||| || ||| Sbjct 978075 CAATGGCAGCAAAAGCAACCAATCTCTCAGCATACAAAGCATC-ATCATTG---TTTATC 978020 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 ||| | || ||||| ||| || | ||||| |||||||| | || || || || Sbjct 978019 CATCTCAAAGCCCATAAAGCCTTCTCCTTAATAGGTGGAATTGTATGGATGGCATTGAAC 977960 Query 4791 AATT-----TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 || | ||| ||| ||| ||||| || || || | ||| ||| Sbjct 977959 AAGTAGTCGGACTCTTT-----CTTGTCAGTGATATAGGTCTCGATCAAAAGGGAATAAG 977905 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 | ||||| || || || || | |||||| || || || ||| ||| || || | || Sbjct 977904 TCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCATAGAAGGCTCTTGCCTCAGGTA 977845 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 || || | || ||| | | | | || || || | || ||||| || || | Sbjct 977844 ACTGCACCTGCTTCATAAAGTTCTGTGCCAAATTCTCATCGACAATACCATCTGAAGCGG 977785 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTA---CTGTTCGTCAGGCTTAAGTTTTTTCC 5022 |||| || ||||| ||| |||| || ||||| || | | || | | | |||| Sbjct 977784 CAAAGAAGGCCAAGACACGAGAGATGAAGTATCTCTCATTGGCATTCATCTTGTCATTCC 977725 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||| || |||||| || | | ||| | || || ||||||| || || || || || | Sbjct 977724 AGTCGGTCAAATCCTTTGAGAGATCGATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCT 977665 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGT 5136 | |||||||| ||| |||||| |||||||| || | || || ||||||| Sbjct 977664 TCTTGTACATTTGCCATATATCATCGTACTGAATAGGGAACATCACGAATCTGT 977611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049454269324