Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20anomalus_20[genbank_20GCA_5F001754015.1_202016-10- 07] 28 sequences; 12,502,959 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12 217 2e-51 seq23 190 3e-43 >seq12 Length=1682134 Score = 217 bits (240), Expect = 2e-51 Identities = 585/886 (66%), Gaps = 14/886 (2%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || || |||||||| | ||| || ||||| ||||| ||| | ||| || | | | Sbjct 1116089 ACACGCTTCATAAATAAATCTGGAATCCAAAGAGCTGGAAACAAATCACGTGCACGAATC 1116148 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || ||||||| | | ||||| ||| || | ||||||| |||||| || Sbjct 1116149 TCCTCTTTACCATGATTCTTTCTGATATCGATAAAGTCGAAGATATCAGCATGCCAAGGC 1116208 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 || | || || || || | || |||| || ||||| || ||||| | |||||| || Sbjct 1116209 TCCAAGTAAATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGATCCACATATCTAGCA 1116268 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 || | || | || | | ||| ||||| |||||||| ||||| ||||| || || | | Sbjct 1116269 GTACTGTTGAACACACGAACCATCGGAATTATACCGTTGGATGTACCATTAGTACCGGCA 1116328 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 ||||| ||| | | ||||| || |||| | || || || || || ||||| Sbjct 1116329 ATATACGAACCAGTGGAACGAATGTTGTGAATGTGAAGACCAATACCACCAGCAGTCTTA 1116388 Query 78303 GATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 || || | ||| || ||||||| |||||||||||||| || ||| |||||| |||| Sbjct 1116389 GAAATCAAAGCACACTGTTTCAAAGTATCGTAGATACCTTCAATAGAGTCATCTTTCATT 1116448 Query 78363 TTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGA 78422 || | || || ||||| ||| | | ||| || ||||| || || || || Sbjct 1116449 GCAACTAAGAAGCATGATGACATCTGAGGGCGTGGAGTACCAGCATTGAACAACGTTGGT 1116508 Query 78423 GATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG-TTTCAATAGCT---GATTC 78478 |||||||| || || || | | || | | | |||| || ||| | || || | Sbjct 1116509 GATGCATGTGTGAAGTATCTCTTTGACATCAAGTCATATGATTCCAACACCTTAGGAATA 1116568 Query 78479 T-ATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAA 78537 | || || |||||| || || || || | ||| | | || || ||||||||| Sbjct 1116569 TCATCACC-----ATGAATACCGACGGCCACTCTCATAAGAAGGTGTTGTGGTCTTTCAG 1116623 Query 78538 CCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597 | |||| ||| ||| |||||| || || ||||||||| || |||||||| |||| Sbjct 1116624 CAACCTTACCATTAATTCTCAACAGATAAGAACGTTCCAAAGTCTTGAAACCAAAGTAGT 1116683 Query 78598 TGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAA 78657 |||| ||||| | |||||| |||| | || || | | ||| || | | ||| Sbjct 1116684 TGTAACTGAAGTCACGGTCGTAATTAATGGCTGAGTTCAACTCATCCTTATGCTCCATAA 1116743 Query 78658 CAATATCCATGACAGTAGTTGAAATAATAGGAGA-TCGTACACCATTTTTAGGATTAACA 78716 |||| | || | ||||| |||||||| | | | | ||| ||||| Sbjct 1116744 CAATCTTATAAACCTCATCAGAAATCATAGGAGACTTCTTCTGGGTCTTT-GGATTGTAG 1116802 Query 78717 TAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTA 78776 ||||| ||| ||| || || |||||| || | || || || | |||||| | ||| Sbjct 1116803 TAGTTGTATAGATCCTCTATAACATCAGAGAAAGGCTTCTTAGTCTGCTTGTGCAAATTT 1116862 Query 78777 GATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGT-GGC 78835 || | || | ||| || || | | ||||||| || ||||| ||| || || || || Sbjct 1116863 GAGATTGCAAGTCTAGCGGCCAAAGTAGCATAGTCTGGATGCATTGTGGT-CATGTATGC 1116921 Query 78836 TGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCA 78881 ||| |||| || | ||| | || ||||| || || || || ||| Sbjct 1116922 TGCAGTTTCAGCAGTCAAATTGTCCAACTCAATGGTGGTAACACCA 1116967 Score = 183 bits (202), Expect = 4e-41 Identities = 524/791 (66%), Gaps = 15/791 (2%) Strand=Plus/Plus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 |||||||| ||||||||||| ||||| | ||| |||| || || || |||||| Sbjct 1114882 TGTACGTAAGTAGTACATACCTGTTTTCAAGCCCTTCTTCCAGCCATAAAAGTGCATGGA 1114941 Query 76871 TGTCAGTTTGGA-ATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 76929 |||| ||| ||| | | | || | ||| || ||||| || ||| || || Sbjct 1114942 AGTCAATTTACCCATAGTTGGTGACTGCAA-ATGGATGTTCATAGATTGAGACTGGCAGA 1115000 Query 76930 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 76989 || | || || |||||||| ||||| | || | | ||| |||| ||| ||||||| | Sbjct 1115001 TGTATGCGCCCCTATCAGCAGCCATATCGATGACAGACTTCTGAGAAATCTCCCAAACTG 1115060 Query 76990 TTTTGAA-AACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCA 77045 | || | ||||| || ||| | ||| |||| ||||| || ||||| ||||| Sbjct 1115061 TCCTGTACAACTTCTT-GATCTTATCGGGAACGTTTGGCAAGTTCTGAATAGAACCGTTG 1115119 Query 77046 TC-TGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCT 77104 || ||| || || ||||| || |||| ||||| | | | | || | | | |||| Sbjct 1115120 TCGTGA-ATGATGAAGTTCTTCATTGCATCGTTCCATATTCCCATGTCAATAAGATCTCT 1115178 Query 77105 AAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 77164 | | | ||||||||| || || ||||| |||| | ||||| | || || || Sbjct 1115179 CAACATGTAAGGATTAACGATCTGGAATTCACCAGCAAGAACTCTTCTCTGATAGATGTT 1115238 Query 77165 ACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGG 77224 | ||| ||||||| | | |||| || | |||| ||| || | |||||||||||| || Sbjct 1115239 AGAGGTGAATGGTTCGAAACATTCGTTATAACCCATAATCTGGGAAGTAGAAGCAGTCGG 1115298 Query 77225 CATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT-CTGATTTTATCTTTTAGAT 77283 ||||||||||||||| | | ||||| |||||| || || || ||| | || ||| Sbjct 1115299 CATAGGTGCCACCAAAAGAGAGTTTCTAAGACCA-GTCTTGGCAATCTTAGCCTTCAGAG 1115357 Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 | ||| ||||| ||||| | ||| | ||| | ||| ||||||||||| || | Sbjct 1115358 TATCCCAGTCCCACAGATCCGTAGGCTTTTTGTTCCACATATCATATTGTAGAATACCCT 1115417 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAAC 77403 | ||| || || | |||||| | ||||| || ||| |||| || | Sbjct 1115418 TTGAAGCTGGAGAGCCTTCATATGTCTGATAAGTACCCTCTTCCACAGCAAGCTGGTTGG 1115477 Query 77404 TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 77463 | |||||||| ||| ||| | || || || |||| | || || || |||| | Sbjct 1115478 ATTCCTCCAATGCAGCGTGATACAAGGTCTCAAATATCTGAATGTTAAGCTCCCGTGCAT 1115537 Query 77464 CAATACTATCAAACGGATAATGTAA--AAGAATAAAGGCATCTGCTAATCCCTGAACTCC 77521 | || ||||| || || | ||| | ||| |||| ||| || | ||||| | || Sbjct 1115538 CTGGACAGTCAAAAGG-TAGTCTAAGCATGAA-GAAGGTATCAGCAAGACCCTGGATACC 1115595 Query 77522 AATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATT 77581 || | |||||||||| | |||| | ||||| | || || |||| ||||| ||||| Sbjct 1115596 AAGAGCAATAGGTCTGTTTCTCATGTTGGAGTTACGGGCCTCAGGAACTGGATAGTAATT 1115655 Query 77582 AATGTCTATAA 77592 |||| |||| Sbjct 1115656 TCTGTCAATAA 1115666 >seq23 Length=1344041 Score = 190 bits (210), Expect = 3e-43 Identities = 568/866 (66%), Gaps = 18/866 (2%) Strand=Plus/Minus Query 47871 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTA 47930 ||||| || |||||||| || || |||| || ||||||||||| || || |||||||| Sbjct 978472 TTCTCAAAGAAATTAGTCTTACCAGCCAAGGAGATATTTTCCATGAAGTCGAATGGATTT 978413 Query 47931 ACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 47990 | || |||| || | |||| ||| | || || || || ||| ||| || Sbjct 978412 GTGACGTTGTAAACCTTCTCGCATCCCAATGCGATAAGCAACCTGTCGGCACAGAACTCA 978353 Query 47991 ATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTA 48050 | || |||||| || | ||||| || | | |||||| ||||| || | Sbjct 978352 ACGTACTGAGCCATCATATCGAAGTTCATACCGAGTAAAGAAACTGGAAGAGCGTCTCTC 978293 Query 48051 -AGAAACTCTTGTTCGATAGTGACAGCATC---CACTATTATCGATGTTACCGTTTCCTC 48106 ||||| | || | | ||| | ||||| || || ||| || || || | ||| Sbjct 978292 CAGAAAGTTTTCT-CAATATTAACAGCCTCGGTCATGATTCTCT-TGATAATGA--CCTT 978237 Query 48107 ACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTC 48166 ||||||||||| | ||| || |||| | ||||||||||| ||| ||||| || Sbjct 978236 ACTTGGTGGATGCTTCAAGTGAGAGAACAAAAGGCATGCAAAATCGGTATGTAGACCCTC 978177 Query 48167 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAG 48226 |||||| | || | |||||||| || || || || ||||| | || | || || | Sbjct 978176 ATCTCTGCAGATAAGCTCGTTAGAGAACGTAAGGCCTGGCATCAAACCTCTCTTCTTCAA 978117 Query 48227 CCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGT 48286 ||| || || | || || |||||||| || || | ||||| | ||| ||||| || Sbjct 978116 CCAGAAGATGGAGGCAAACGATCCAGAGAAAAACACACCTTCAATGGCAGCAAAAGCAAC 978057 Query 48287 AAGTCTCTCTCCGT---AACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTT 48343 | |||||| | | || | || |||| |||||| | ||||| |||||| Sbjct 978056 CAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAAAGCCTT 977997 Query 48344 CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATC 48403 || ||| | | || ||||| | || ||||| || | ||| || || | || Sbjct 977996 CTCCTTAATAGGTGGAATTGTATGGATGGCATTGAACAAGTAGTCGGACTCTTTCTTGTC 977937 Query 48404 TTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCAT 48463 | | || || || || ||||| ||| | || ||||| || || |||| || Sbjct 977936 AGTGATATAGGTCTCGATCAAAAGGGAATAAGTCTCAGAGTGGATGTTCTCAACCATAAT 977877 Query 48464 CTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC--A 48521 ||| || || || || ||| || || | | ||| |||| | | || || |||| Sbjct 977876 CTGGAAACCATAGAAGGCTCTTGCCTCAGGTAACTGCACCTGC-TTCATAA-AGTTCTGT 977819 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||||||||||||| || || ||||| ||| ||||| || || || ||| | || Sbjct 977818 GCCAAATTCTCATCGACAATACCATCTGAAGCGGCAAAGAAGGCCAAGACACGAGAGATG 977759 Query 48582 AAATATTTTTCGTTGGAAGTCAGTTT---ATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||| | || |||| | ||| || ||||||||| | | ||| ||||| | ||| Sbjct 977758 AAGTATCTCTCATTGGCATTCATCTTGTCATTCCAGTCGGTCAAATCCTTTGAGAGATCG 977699 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 | || || || ||||| || || ||||| || || || ||||| | |||||||||| | Sbjct 977698 ATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCATATATCATCG 977639 Query 48699 TATTGGATTGGGAAAATAACAAATCT 48724 || || || ||||| || || ||||| Sbjct 977638 TACTGAATAGGGAACATCACGAATCT 977613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668556865920