Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq290 140 3e-28 >seq290 Length=58723 Score = 140 bits (154), Expect = 3e-28 Identities = 420/648 (65%), Gaps = 3/648 (0%) Strand=Plus/Plus Query 16934 GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCT 16993 |||| ||| || | ||| |||| || ||||||||||| ||||| ||||| || Sbjct 53058 GGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCC 53117 Query 16994 CTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAA 17053 |||| ||||| || || || || || | || |||||| |||| ||||| ||||| Sbjct 53118 CTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAG 53177 Query 17054 AATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAAT 17113 || || | ||| ||||| ||||| ||||| | |||||||| || ||||| |||| ||| Sbjct 53178 AAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAAT 53237 Query 17114 CGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGC 17173 | || || ||| || || | || |||||| || |||| || |||| | Sbjct 53238 CTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCC 53297 Query 17174 TTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATT 17233 || || || || | || || || || || | || |||| |||| | Sbjct 53298 TTAATAGGTGGAATGGTATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTG 53357 Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || | | ||| ||| | || ||||| |||||||| | ||||| Sbjct 53358 ATGTACGTTTCAAGTAAAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGG 53417 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||||||| || ||||| | || |||||| | | ||| || || | Sbjct 53418 AAACCGTAAAAGGCTCTTGCTTCTGGTAATTGAACCTGCTTCATGAAATTTTGTGCCAAG 53477 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || |||| || || || || ||||| ||||| ||||| | | || || || ||| Sbjct 53478 TTCTCGTCAACAATACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTAT 53537 Query 17414 TTTTCGTCCGGTGTAA---GAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 | |||| | | | | |||||| | || || || || | ||| | || Sbjct 53538 CTCTCGTTGGCATTCATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCC 53597 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGT 17530 || | ||||||||| ||| | ||||| |||||||| | ||| ||||||| ||| || Sbjct 53598 TCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGA 53657 Query 17531 ATGGGGAATACAACATATCTATCTAAGGATTCCTTTAACACGGGCTCG 17578 || ||||| | ||| |||| | || | ||||| | || |||||| Sbjct 53658 ATAGGGAACATCACAAATCTGTGTATGTTCTCCTTAAGCAAAGGCTCG 53705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539273005040