Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14 237 2e-57 seq290 212 7e-50 >seq14 Length=27313 Score = 237 bits (262), Expect = 2e-57 Identities = 1312/2070 (63%), Gaps = 53/2070 (3%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| |||| | | |||| | ||||| | |||||||| || || || | | Sbjct 16365 GTGAATTGGATGGCACGAGCAGCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAA 16424 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCG-GATCTGCTA 52925 || |||| |||||||| ||||| || | || ||| | | ||| ||| | Sbjct 16425 CCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGAT-TGCAA 16483 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 ||||| ||||| |||||| || ||| |||| || ||||| |||||||| | | Sbjct 16484 G-TGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGA 16542 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 ||| | || || | || |||||||| ||| | || | | |||||| | ||||||| Sbjct 16543 TGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAA 16602 Query 53046 GGTTTG-TA--TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 53102 || | || |||||||| |||||| || || || |||||| || |||| | Sbjct 16603 TATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTGCATCGT 16662 Query 53103 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 53162 |||||| | | || | | | || || | | ||||| || | || || || | Sbjct 16663 TCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCAC 16722 Query 53163 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 53222 ||| | ||||| | || || ||| ||| | || || | |||| || | | Sbjct 16723 CAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAAC 16782 Query 53223 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 53282 ||| ||| |||| || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 16783 CCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGAC 16842 Query 53283 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342 | | | ||| || | || | || ||||||| ||| ||||| | || | | Sbjct 16843 CATCCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGG--CTTCTT 16900 Query 53343 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 53400 | || |||||||| || || || ||| | || || ||||| Sbjct 16901 ATTCCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTA 16960 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 | || || | | ||| || | | |||| | ||||| | || | ||| || Sbjct 16961 CGTACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCAGAGCACCATGGTACAAGGTCTC 17020 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AGAA 53519 ||| |||| | || || || | ||||| ||| |||||||| ||| | || | | Sbjct 17021 GAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGC-AATCTGAGCATGA 17079 Query 53520 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 53579 |||| || || | ||||||||||||| | |||||||||| | |||| | || ||| Sbjct 17080 AGAACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGT 17139 Query 53580 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGA 53636 | || ||||||| || || ||||| | || || | || | ||| | ||| Sbjct 17140 TGCGGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTGTGA 17199 Query 53637 CAA------TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA-ATTG-TCCATCTAT 53688 ||| | | ||| || | || | |||| | ||| | || ||| | | Sbjct 17200 CAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGA----ACCAACAGTGATCCTTGTCG 17255 Query 53689 TACA-AACATGTTCA---ATGCAATAGAT-GCCAGATTACAAACGGCTACCTCATTAGCA 53743 || |||| | || | |||| | | |||| ||||| || | ||||||| | | Sbjct 17256 GACTCAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCATCTGGA 17315 Query 53744 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 53803 | || | | | |||| ||| | ||| | ||||||||||||| || || | | Sbjct 17316 GAAGAGTACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAGTTCTTT 17375 Query 53804 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 |||||||||||| |||| || |||||||| |||| ||||| |||||||| ||||| || Sbjct 17376 TGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTTCTGTC 17435 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGAT-TTGTATCTCTT 53922 || | || | |||| | ||| | ||||||| | | | || | || Sbjct 17436 TGAGCCTCCAAAATCTGATACCACAACTTCTGAGCCTTAACGGTTCTTCTTCCACGTCCC 17495 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 | || | ||||| | || ||||| |||||||||||| || |||||| | || Sbjct 17496 TCCT-TCTCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATCTGAAAGACC 17554 Query 53983 AGGACATTCATCCGGACACATCAACGACCAC-TCTCCGTCATCCTTCA-CTCGTTTCATA 54040 || ||| ||| | | ||| | ||| | || | | |||| | || ||||| Sbjct 17555 TGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCATT--TTGTTCAACACGCTTCATG 17612 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || |||||||| |||||||||||| || | ||| | | | ||||| || || Sbjct 17613 AATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTCCTTACCG 17672 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| | | ||||| ||| | | ||||| | |||||| ||||| ||||| || Sbjct 17673 TGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAAGTAGATA 17732 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | || | || || | ||||| || || || || | || ||||| || | || | Sbjct 17733 GCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACTGTTGAAC 17792 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||||||||||||||||| ||| ||||| || | || || || Sbjct 17793 ACACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTATGAACCT 17852 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | | |||||| ||| ||| |||||| || || || ||| | || || || || || Sbjct 17853 GTAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAATCAAGGCA 17912 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || |||| || || || ||||| || || ||| |||||| |||| || || || Sbjct 17913 CACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAACTAAGAAG 17972 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || ||||| || | || ||| || |||||||| || || ||||| ||||| || Sbjct 17973 CAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGCGTGTGTG 18032 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATG 54519 || || | | || | | || |||| ||| | | || ||||| || | || Sbjct 18033 AAGTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATCACCG-TG 18091 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 |||||| || || || | ||| | | |||||||| || || | | ||| ||||| Sbjct 18092 AATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTCTGCAACCTTACCATTTAT 18151 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 54637 ||| || || || || | || ||||| ||||| ||||| || ||||| || Sbjct 18152 CCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAGTAGTTATAGCTGAAA--TCA 18209 Query 54638 CGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA 54697 || || || |||| | ||||| | | |||||| | || | || ||| | ||| Sbjct 18210 CGGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCTTCATGAC--AATC--TTGTA 18265 Query 54698 A--TACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 | | ||| || || || || || | ||| |||| || || |||||| | | Sbjct 18266 AACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTTGGGTTATAATAGTTGTAAAG 18325 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 ||| | || || ||| ||| | || || || | ||||| | ||| || | ||| | Sbjct 18326 ATCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGCAAATTAGAAATGGCAAG 18385 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATG 54843 ||| ||||| | | | |||||||| ||||| Sbjct 18386 TCTGGCGGCCAAAGTAGCATAATCTGGATG 18415 >seq290 Length=58723 Score = 212 bits (234), Expect = 7e-50 Identities = 601/908 (66%), Gaps = 18/908 (2%) Strand=Plus/Plus Query 23823 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 23882 |||| | |||||| || || ||||| ||| || | || || || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 23883 TTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT 23942 ||||| | || || || || ||||| || ||| ||||||||||| |||| || | | | Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 23943 TTAAATCCCAATTCAGAAATCAATCTATCTGCGACA-AACTCCATATATGTTTTCATCAT 24001 | | ||||||| || || |||||| || || ||| || || | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCAT 52954 Query 24002 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAA 24060 || | ||||| || | | |||||| ||||| || | ||||| |||| | ||| Sbjct 52955 ATCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAA 53013 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAA 24119 || ||| || || || ||||| ||||| | | | | ||| ||||||| | ||| Sbjct 53014 TATTGACAGCCTCGGTCATAATTT-TCTTAATAATAACCTTACTAGGTGGATGCTTCAAA 53072 Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || |||| | ||||||||||| ||||||||||| || || | ||| | || Sbjct 53073 TGAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCA 53132 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 ||||| || || ||||| ||||| | || | ||| || | ||| || || || ||||| Sbjct 53133 TTGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAAC 53192 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || ||||| ||||||| || || | || |||||||| | | ||| || |||| Sbjct 53193 GAGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAA 53252 Query 24300 GCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 || ||| | |||||| | |||||| ||||| | || | | || || Sbjct 53253 GCATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATG 53312 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || | |||||||| || | |||| || || | || | | || || |||| Sbjct 53313 GTATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGT 53372 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 ||||| || | || || || ||||| |||| || || || ||||| || | Sbjct 53373 AAAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCT 53432 Query 24477 CTAGCCTC-GGTAATCTGTA-CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTA 24534 || || || |||||| || | || || | |||| || ||| || || || | || | Sbjct 53433 CTTGCTTCTGGTAAT-TGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAA 53490 Query 24535 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 24594 | || ||| || |||||||| ||||| ||| | |||||| ||| | |||| ||| Sbjct 53491 TACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGT-TGGCA 53549 Query 24595 TTAGT----TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 24650 || | || ||||| ||| | | || ||||| | ||| | || || | |||||| Sbjct 53550 TTCATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAA 53609 Query 24651 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 || || ||||| ||||| |||||||| | ||| || |||| || ||||| || || || Sbjct 53610 AAAGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATC 53669 Query 24711 ACAAATCT 24718 |||||||| Sbjct 53670 ACAAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714341753440