Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq187 114 3e-20 seq135 91.5 3e-13 >seq187 Length=11729 Score = 114 bits (126), Expect = 3e-20 Identities = 304/450 (68%), Gaps = 21/450 (5%) Strand=Plus/Plus Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 ||||||||| |||||| || || || |||| ||||| || ||||| || ||| |||| Sbjct 2178 GTATTTGGAGCCGTGGCATGCAGACATCATGGAATTCCTCGATTTGAAGAAAAACCACGG 2237 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||| ||| ||| | || || || || ||||| | ||||| | ||||||||||||| Sbjct 2238 CAAGGAGGAGATGCGGGCCCGGGATCTATTCTATGCATTGTGGATTCCCGACTTGTTCAT 2297 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGAC---GCCCCGGA 249461 ||| || ||| || ||| | |||| || |||||||| ||| ||||||| Sbjct 2298 GCGGCGGGTCGAGAAGGACCAGGTGTGGAGTCT--TTTCTCCG-AGGACACGGCCCCGG- 2353 Query 249462 CCTCATCGATCTACA--CGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCAAC 249519 | ||| | ||| || ||||| ||||| || || ||||||| ||| Sbjct 2354 GGTTGTCGGAC-ACATGGGGGGCCGAGTTCGAGTCTCTGTACGAGCAATACGA--GCAAG 2410 Query 249520 GGCATCGG----CAAGACA-ATCAAGGCTCGGACCCTTTTTGCGAAGGTGGTGGAGTCCC 249574 | ||| ||| || | ||||| || | | | | || | | ||| | || | Sbjct 2411 AGGGCCGGTACCTAAGGCAGGTGAAGGCCCGTAAGGTCTGGGAGAGGATTGTGTACTCGC 2470 Query 249575 AGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 ||| ||||| ||| |||| |||| | | |||||| ||||||||||| || | ||| Sbjct 2471 AGACGGAGACTGGGACACCGT-TTATGCTCTACAAAGATGCGTGCAACGCGAAATGCAAC 2529 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTC 249692 || | | || || || ||| ||||| |||||||| ||| |||||| | | ||||| Sbjct 2530 CAGAAGAACCTCGGCACGATCAAGTCGTCGAATCTCTGCTGC-GAGGTGGTCGAGTACTC 2588 Query 249693 GTCCAAGGAGGAGATTGCCGTCTGCAACCT 249722 || |||||| ||||| || || |||||||| Sbjct 2589 GTGCAAGGATGAGATCGCGGTGTGCAACCT 2618 >seq135 Length=78016 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288 || ||||| ||| | ||||| | || || ||||| || || | |||||||||||||| Sbjct 62384 GATGAGGCAGACTCGATGACCGGAGATGCACAGTCTGCACTAAGACGAACGATGGAGACA 62325 Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCC 254346 |||| | | ||| | |||||||| | |||||||||||| |||| || || | | Sbjct 62324 TACTCGGGAATAACGAGATTTTGCCTAATTTGCAACTACGTGACTCGA--ATTATTGATC 62267 Query 254347 CGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 || |||||||||| ||| | |||||| |||| Sbjct 62266 CGTTGGCTTCTCGATGCTCGAAGTTTAGATT 62236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073752945035904