Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq290 242 4e-59 >seq290 Length=58723 Score = 242 bits (268), Expect = 4e-59 Identities = 593/888 (67%), Gaps = 17/888 (2%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 || || || ||| |||||| || |||||||||||||| ||||| ||| || || || Sbjct 52797 TTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTC 52856 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 |||||||| || |||||||| || | | | ||||| ||||| || | | | || Sbjct 52857 TCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAAGC 52916 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 ||||| || ||| ||| |||| ||| || | ||| | ||| | |||||||| | | Sbjct 52917 AATCTGTCGGCACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAA 52976 Query 14093 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 || || | || | | ||| |||| | | ||| ||||||||| | ||||| Sbjct 52977 GAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAAT 53035 Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 14211 || ||||||| | ||| ||| |||| || | ||| || | | || || || Sbjct 53036 TTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGAA 53095 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 |||| ||| || |||||||| || | |||||| || || || || || | ||| ||||| Sbjct 53096 ATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCAT 53155 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 ||| |||| || || ||||| || || | || || || || || ||||| | ||||| Sbjct 53156 CAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCTC 53215 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 | |||||||| || | |||| || || || | || | | || ||||||| | Sbjct 53216 GATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCT 53275 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451 ||||||| || |||| |||||| || || | |||||||| || || | Sbjct 53276 CAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATGGATAGCATTGAACAAGTA 53335 Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAGCTA-TACATTTCAGAG 14509 || ||| || | | ||||| || |||| ||| ||| | || | |||||| Sbjct 53336 GTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTAA--AAGGGAGTAGGTCTCAGAG 53393 Query 14510 TGTATGTTTTC---CATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 || ||||| || |||| ||||| ||||| ||||| ||| ||||||| |||| Sbjct 53394 TGGATGTTCTCAACCATA---ATCTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGA 53450 Query 14567 ACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 |||| || | |||| ||| ||||| || || | ||| ||||||||| ||| ||||| Sbjct 53451 ACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAAA 53509 Query 14626 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTT---CATTGCTGAGTTTTTTCCAATC 14682 ||||||||| | ||||||||| ||| | |||| | || ||||| || Sbjct 53510 AAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCATCTTGTTGTTCCAGTC 53569 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 | || |||||||| ||||| | || ||| | ||||||||| || | || || || Sbjct 53570 AGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTT 53629 Query 14743 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 ||||||| |||||| || | || ||||| || | |||||||| Sbjct 53630 ATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482339703325040