Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14 295 8e-75 seq290 196 6e-45 >seq14 Length=27313 Score = 295 bits (326), Expect = 8e-75 Identities = 1324/2067 (64%), Gaps = 47/2067 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| |||| | | |||| | ||||| | |||||||| || || || | | Sbjct 16365 GTGAATTGGATGGCACGAGCAGCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAA 16424 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG-GATCTGCTA 62163 || |||| |||||||| ||||| ||| | || ||| | | ||| ||| | Sbjct 16425 CCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGAT-TGCAA 16483 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 ||||| ||||| |||||| || ||| |||| || ||||| |||||||| | | Sbjct 16484 G-TGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGA 16542 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 ||| | || || | || |||||||| ||| | || | | |||||| | ||||||| Sbjct 16543 TGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAA 16602 Query 62284 GGTTTG-TA--TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340 || | || ||||||||||||||| || || || |||||| || |||| | Sbjct 16603 TATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTGCATCGT 16662 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 |||||| | | || | | | || || | | || || || | ||||| || | Sbjct 16663 TCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCAC 16722 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 ||| | ||||| | || || ||| ||| | || || | |||| || | | Sbjct 16723 CAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAAC 16782 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 ||| ||| |||| || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 16783 CCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGAC 16842 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 | | | ||| || | || | | ||||||| ||| ||||| | || | Sbjct 16843 CATCCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGGCTTCTTAT 16902 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640 || || |||||||| || || || ||| | || || || || | Sbjct 16903 TCCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTACG 16962 Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAA 62700 || || | | ||| || | | |||| | ||||| | || | ||| || | Sbjct 16963 TACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCAGAGCACCATGGTACAAGGTCTCGA 17022 Query 62701 AGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG-AGAATA 62759 | |||| | || || || | ||||| |||| |||||||| ||| | || | | Sbjct 17023 ATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGC-AATCTGAGCATGAAG 17081 Query 62760 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62819 |||| ||||| | ||||||||||||| | |||||||||| | |||| | || ||| | Sbjct 17082 AACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGTTG 17141 Query 62820 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACA 62876 || ||||||| || || ||||| | || || | || | || | ||||| Sbjct 17142 CGGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTGTGACA 17201 Query 62877 A------TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTACA 62930 | | | ||| || | || | |||| || | | || | | || Sbjct 17202 ACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCAAC--AGTGATCCTTGTCGGACT 17259 Query 62931 -AACATGTTCA---ATGCAACAGAT-GCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 |||| | || | |||| | | |||| |||||||| | ||||||| | | | Sbjct 17260 CAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCATCTGGAGAAG 17319 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 || | | | |||| ||| | ||| | ||||||| ||||| || || | ||||| Sbjct 17320 AGTACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAGTTCTTTTGAT 17379 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 |||||||| |||| || |||||||| |||| ||||| || ||||| ||||| |||||| Sbjct 17380 TACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTTCTGTCTGAG 17439 Query 63106 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGAT-TTGTATCTCCTTTC 63163 || | |||| | ||| | | || ||||||| | | | || | ||| | | Sbjct 17440 CCTCCAAAATCTGATACCACAACTTCT-GAGCCTTAACGGTTCTTCTTCCACGTCCCTCC 17498 Query 63164 TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACAT-TGTCCAATCTAG 63222 | | ||||| |||| ||||| ||| |||||||| || |||||| || | || | Sbjct 17499 T-TCTCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATCTGAAAGACCTGG 17557 Query 63223 GACATTCATCCGGACACATCAACGACCAC-TCTCCGTCATCCTTCA-CTCGTTTCATAAA 63280 | | | || ||| | | ||| | ||| | || | | |||| | || ||||| || Sbjct 17558 GGCCT-CAGAAGGAGAAAACAAAGTCCATGTATCATT--TTGTTCAACACGCTTCATGAA 17614 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||||| |||||||||||| || | ||| | || | ||||| || || Sbjct 17615 TAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTCCTTACCGTG 17674 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| | | ||||| ||| | | ||||| | |||||| ||||| ||||| || || Sbjct 17675 ATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAAGTAGATAGC 17734 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 || | || || | ||||| || || || || | || ||||| || | || | || Sbjct 17735 AATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACTGTTGAACAC 17794 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| ||||||||||| || ||| |||| |||||||| | || || || | Sbjct 17795 ACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTATGAACCTGT 17854 Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 | |||||| ||| ||| |||||| || || || ||| | || || || || || || Sbjct 17855 AGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAATCAAGGCACA 17914 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 |||| || ||||| ||||| ||||| || ||||| |||| || || || || Sbjct 17915 CTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAACTAAGAAGCA 17974 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 ||||| || | || | ||| || |||||||| || || ||||| ||||| || || Sbjct 17975 AGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGCGTGTGTGAA 18034 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63759 || | | || | | || |||| ||| | | || ||||| || | |||| Sbjct 18035 GTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATCACCG-TGAA 18093 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 |||| || || || | ||| | | |||||||| || || ||| || ||||| Sbjct 18094 TTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTCTGCAACCTTACCATTTATCC 18153 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCG 63877 |||||| || || || | || ||||| ||||| ||||| || ||||| || || Sbjct 18154 TCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAGTAGTTATAGCTGAAA--TCACG 18211 Query 63878 TTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA- 63936 || || |||| |||| || | || |||||| | || | || || | || || Sbjct 18212 GTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCTTCATGACAAT---CTTGTAAAC 18268 Query 63937 TACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994 | ||| || || || || || | ||| |||| || ||| ||||||| | | ||| Sbjct 18269 TTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTTGGGTTATAATAGTTGTAAAGATC 18328 Query 63995 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCT 64054 || || || ||| ||| | || || || | |||||| | ||| || ||||| | ||| Sbjct 18329 TTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGCAAATTAGAAATGGCAAGTCT 18388 Query 64055 GGCGGCTAGAATGGCATAATCCGGATG 64081 |||||| | | | |||||||| ||||| Sbjct 18389 GGCGGCCAAAGTAGCATAATCTGGATG 18415 >seq290 Length=58723 Score = 196 bits (216), Expect = 6e-45 Identities = 593/906 (65%), Gaps = 14/906 (2%) Strand=Plus/Plus Query 33270 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 33329 |||| | |||||| || || ||||| ||| || | || || || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 33330 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttt 33389 || || |||| || || || ||||| || || || ||||||||| ||||||||| ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 33390 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATT 33449 | | ||||||| || || |||||| || || |||||| | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATA 52955 Query 33450 TCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAAT 33508 || | ||||| || | | |||||| ||||| || | ||||| |||| | |||| Sbjct 52956 TCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAAT 53014 Query 33509 GGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATG 33568 || || | || ||||| ||| | | | ||| |||||||| ||||| Sbjct 53015 ATTGACAGCCTCGGTCATAATTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATG 53074 Query 33569 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTT 33628 |||| | ||||||||||| || |||||||| || || | ||| | || || Sbjct 53075 AGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATT 53134 Query 33629 AGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33688 || || || ||||| ||||| | || | ||| || | ||| || || || || || || Sbjct 53135 GGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGA 53194 Query 33689 TCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33748 || || ||||| | || || | ||||||||||| | | |||||| |||| || Sbjct 53195 GCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGC 53254 Query 33749 GCTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33805 ||| | |||||| | |||||| ||||| | || | | || || || Sbjct 53255 ATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGT 53314 Query 33806 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 33865 | || ||||| || | |||| || || | || | | || || || | || Sbjct 53315 ATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTAA 53374 Query 33866 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33925 ||| || | || || || ||||| |||| ||||| || ||||| || ||| Sbjct 53375 AAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCT 53434 Query 33926 AGCCTC-GGTAATCTGCA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983 || || |||||| || | || || | |||| || ||| || || || | || || Sbjct 53435 TGCTTCTGGTAAT-TGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATA 53492 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 34043 |||||| || |||||||| ||||| ||| | |||||| ||| | |||| ||| || Sbjct 53493 CCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGT-TGGCATT 53551 Query 34044 AGT----TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 | || ||||| ||| | | || ||||| | ||| | || || | |||||||| Sbjct 53552 CATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAA 53611 Query 34100 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 34159 || ||||| ||||| |||||||| | ||| || |||| || || || ||||| || || Sbjct 53612 AGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCAC 53671 Query 34160 AAATCT 34165 |||||| Sbjct 53672 AAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629809900479840