Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq290 132 5e-26
seq14 109 5e-19
>seq290
Length=58723
Score = 132 bits (146), Expect = 5e-26
Identities = 573/896 (64%), Gaps = 34/896 (4%)
Strand=Plus/Plus
Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396
||| || || ||| ||||| || | || || || ||||||||||| | | || || |
Sbjct 52796 CTTCTGGTAGTCAGAAACTC-TCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGT 52854
Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456
|||||||||| || ||||| ||||| | ||||| ||||| || || | | |
Sbjct 52855 TCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAA 52914
Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516
||||| || || |||||| | ||| || | ||| | | | |||||||| | |
Sbjct 52915 GCAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCA 52974
Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576
| || || | |||| | || | || ||| || ||||| || || || | || |
Sbjct 52975 AAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCTCAATATTGACAGCCTCGGTCATAA 53034
Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636
| | | |||| ||||| |||||||| ||||| |||| | || || |
Sbjct 53035 TTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGA 53094
Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696
||||| ||||| ||| || || || | || || ||||| || || || | ||| ||||
Sbjct 53095 AATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCA 53154
Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756
|||| |||| || || | ||| || |||| ||||| || ||||| ||||| | ||||
Sbjct 53155 TCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCT 53214
Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATATA------CCTTGTTGCTAGATATCC 11810
| | || ||||| || || | ||| || |||| | | | ||| | |||||
Sbjct 53215 CGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTT---TATCC 53271
Query 11811 ATTTTCTGGCCCAATCAGC--TTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868
|| | ||||| ||| |||| || || | | || || | ||||| || ||
Sbjct 53272 ATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGG--TGGAATGGTATGGATAGCATTGAA 53329
Query 11869 TAAAT----GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924
|| | | | | ||| || || | | || || || | ||| | ||
Sbjct 53330 CAAGTAGTCGGACTCCTTC----TTGTCGGTGATGTACGTTTCAAGTAAAAGGGAGTAGG 53385
Query 11925 TTTCTGAATGAATATTTT---CCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981
| || || || || || | ||||| || || || || || || || ||| ||||
Sbjct 53386 TCTCAGAGTGGATGTTCTCAACCATA---ATCTGGAAACCGTAAAAGGCTCTTGCTTCTG 53442
Query 11982 AACACTGTACAT-CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040
| || || | | ||| |||| ||| || || ||||| | |||||||||||| |
Sbjct 53443 GTAATTGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATACCATCAGAA 53501
Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGT---CTTTAGTTAATTTA 12097
| ||||||||||| | | | | |||||||||| | |||| | || | ||
Sbjct 53502 GCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCATCTTGTTG 53561
Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157
| ||| ||| || || || || | ||| | || ||| | ||||||||| ||| |
Sbjct 53562 TTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCC 53621
Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
| | |||||||||| ||| ||||||| |||| ||||||||| || || || ||
Sbjct 53622 GCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAATCT 53677
>seq14
Length=27313
Score = 109 bits (120), Expect = 5e-19
Identities = 295/447 (66%), Gaps = 11/447 (2%)
Strand=Plus/Plus
Query 36949 GCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTA 37008
|||||||||||||| ||||| || | | | |||| ||||| | |||||||| || |
Sbjct 16518 GCACCTCTGTCGGCAGCCATGTCGATGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTG 16577
Query 37009 TATATTTGTTTTATATTATCTGGTAAAT---CTAAATGTTGAATAGAACCATTATGTAAC 37065
|| | || || || || ||||| | || ||| | ||||| || ||||| |
Sbjct 16578 TACAATTTCTTAATGTTGTCTGGAATATTAGGTAAGTTCTGAATGGATCCATTGTCATGA 16637
Query 37066 ACAATTGTATTCTTTATGTCATTATTCCACATATTTC--TACTTATTAGTTCTCTCAATA 37123
| || |||||| || ||| ||| |||||| | || || || || || | |
Sbjct 16638 ATGATGAAATTCTTCATTGCATCGTTC--CATATTCCCATATCAATAAGGTCCCTTAGCA 16695
Query 37124 GGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAG 37183
|| ||||| |||| ||| || || |||| | |||||||| ||| || || |
Sbjct 16696 TGTAAGGATTGACAATCTGGAACTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGG 16755
Query 37184 TATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTG 37243
| |||| |||| | |||| || | || | || ||||| ||||| ||||| ||||| |
Sbjct 16756 TGAATGGCTCAAAGCACTCGTTGTAACCCATAATCTGAGAGGTAGAGGCAGTTGGCATAG 16815
Query 37244 GTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAA--TTCTCTTTTTTAGTTCATT 37301
| || | | ||| |||||| | |||| || | || | || ||| |
Sbjct 16816 GAGCGACCAAAAGCGAATTTCTAAGACCATCCTTAGCGATCTTGGCCTTCAAAGT--CTC 16873
Query 37302 CCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACT 37361
||||||||| | ||| ||||| ||||| ||||||||| || || |||||||| ||
Sbjct 16874 CCAATCCCACAGATCAGTTGGCTTCTTATTCCACATATCGTACTGGAGAATACCCTTGGA 16933
Query 37362 CGCTGGAGAATCGTTATATGTCTCATA 37388
|||||||| | | || ||||| ||
Sbjct 16934 AGCTGGAGAGCCTTCGTAGGTCTCGTA 16960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468519072284320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |