Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq290 132 5e-26 seq14 109 5e-19 >seq290 Length=58723 Score = 132 bits (146), Expect = 5e-26 Identities = 573/896 (64%), Gaps = 34/896 (4%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||| || || ||| ||||| || | || || || ||||||||||| | | || || | Sbjct 52796 CTTCTGGTAGTCAGAAACTC-TCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGT 52854 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 |||||||||| || ||||| ||||| | ||||| ||||| || || | | | Sbjct 52855 TCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAA 52914 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 ||||| || || |||||| | ||| || | ||| | | | |||||||| | | Sbjct 52915 GCAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCA 52974 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | || || | |||| | || | || ||| || ||||| || || || | || | Sbjct 52975 AAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCTCAATATTGACAGCCTCGGTCATAA 53034 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAA 11636 | | | |||| ||||| |||||||| ||||| |||| | || || | Sbjct 53035 TTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGA 53094 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 ||||| ||||| ||| || || || | || || ||||| || || || | ||| |||| Sbjct 53095 AATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCA 53154 Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 |||| |||| || || | ||| || |||| ||||| || ||||| ||||| | |||| Sbjct 53155 TCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCT 53214 Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATATA------CCTTGTTGCTAGATATCC 11810 | | || ||||| || || | ||| || |||| | | | ||| | ||||| Sbjct 53215 CGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTT---TATCC 53271 Query 11811 ATTTTCTGGCCCAATCAGC--TTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 || | ||||| ||| |||| || || | | || || | ||||| || || Sbjct 53272 ATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGG--TGGAATGGTATGGATAGCATTGAA 53329 Query 11869 TAAAT----GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 || | | | | ||| || || | | || || || | ||| | || Sbjct 53330 CAAGTAGTCGGACTCCTTC----TTGTCGGTGATGTACGTTTCAAGTAAAAGGGAGTAGG 53385 Query 11925 TTTCTGAATGAATATTTT---CCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 | || || || || || | ||||| || || || || || || || ||| |||| Sbjct 53386 TCTCAGAGTGGATGTTCTCAACCATA---ATCTGGAAACCGTAAAAGGCTCTTGCTTCTG 53442 Query 11982 AACACTGTACAT-CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | || || | | ||| |||| ||| || || ||||| | |||||||||||| | Sbjct 53443 GTAATTGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATACCATCAGAA 53501 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGT---CTTTAGTTAATTTA 12097 | ||||||||||| | | | | |||||||||| | |||| | || | || Sbjct 53502 GCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCATCTTGTTG 53561 Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 | ||| ||| || || || || | ||| | || ||| | ||||||||| ||| | Sbjct 53562 TTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCC 53621 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 | | |||||||||| ||| ||||||| |||| ||||||||| || || || || Sbjct 53622 GCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAATCT 53677 >seq14 Length=27313 Score = 109 bits (120), Expect = 5e-19 Identities = 295/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Plus Query 36949 GCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTA 37008 |||||||||||||| ||||| || | | | |||| ||||| | |||||||| || | Sbjct 16518 GCACCTCTGTCGGCAGCCATGTCGATGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTG 16577 Query 37009 TATATTTGTTTTATATTATCTGGTAAAT---CTAAATGTTGAATAGAACCATTATGTAAC 37065 || | || || || || ||||| | || ||| | ||||| || ||||| | Sbjct 16578 TACAATTTCTTAATGTTGTCTGGAATATTAGGTAAGTTCTGAATGGATCCATTGTCATGA 16637 Query 37066 ACAATTGTATTCTTTATGTCATTATTCCACATATTTC--TACTTATTAGTTCTCTCAATA 37123 | || |||||| || ||| ||| |||||| | || || || || || | | Sbjct 16638 ATGATGAAATTCTTCATTGCATCGTTC--CATATTCCCATATCAATAAGGTCCCTTAGCA 16695 Query 37124 GGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAG 37183 || ||||| |||| ||| || || |||| | |||||||| ||| || || | Sbjct 16696 TGTAAGGATTGACAATCTGGAACTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGG 16755 Query 37184 TATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTG 37243 | |||| |||| | |||| || | || | || ||||| ||||| ||||| ||||| | Sbjct 16756 TGAATGGCTCAAAGCACTCGTTGTAACCCATAATCTGAGAGGTAGAGGCAGTTGGCATAG 16815 Query 37244 GTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAA--TTCTCTTTTTTAGTTCATT 37301 | || | | ||| |||||| | |||| || | || | || ||| | Sbjct 16816 GAGCGACCAAAAGCGAATTTCTAAGACCATCCTTAGCGATCTTGGCCTTCAAAGT--CTC 16873 Query 37302 CCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACT 37361 ||||||||| | ||| ||||| ||||| ||||||||| || || |||||||| || Sbjct 16874 CCAATCCCACAGATCAGTTGGCTTCTTATTCCACATATCGTACTGGAGAATACCCTTGGA 16933 Query 37362 CGCTGGAGAATCGTTATATGTCTCATA 37388 |||||||| | | || ||||| || Sbjct 16934 AGCTGGAGAGCCTTCGTAGGTCTCGTA 16960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519072284320