Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14 262 5e-65 seq290 230 3e-55 >seq14 Length=27313 Score = 262 bits (290), Expect = 5e-65 Identities = 1323/2072 (64%), Gaps = 57/2072 (3%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| |||| | | |||| | ||||| | |||||||| || || || | | Sbjct 16365 GTGAATTGGATGGCACGAGCAGCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAA 16424 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG-GATCTGCTA 64956 || |||| |||||||| ||||| ||| | || ||| | | ||| ||| | Sbjct 16425 CCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGAT-TGCAA 16483 Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016 ||||| ||||| |||||| || ||| |||| || ||||| |||||||| | | Sbjct 16484 G-TGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGA 16542 Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 ||| | || || | || |||||||| ||| | || | | |||||| | ||||||| Sbjct 16543 TGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAA 16602 Query 65077 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 65133 || | || ||||||||||||||| || || || |||||| || |||| | Sbjct 16603 TATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTGCATCGT 16662 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 |||||| | | || | | | || || | | ||||| || | || || || | Sbjct 16663 TCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCAC 16722 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 ||| | ||||| | || || ||| ||| | || || | |||| || | | Sbjct 16723 CAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAAC 16782 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 ||| ||| |||| || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 16783 CCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGAC 16842 Query 65314 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373 | | | ||| || | || | || ||||||| ||| ||||| | || | | Sbjct 16843 CATCCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGG--CTTCTT 16900 Query 65374 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 65431 | || |||||||| || || || ||| | || || ||||| Sbjct 16901 ATTCCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTA 16960 Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 | || || | | ||| || | | |||| | ||||| | || | ||| || Sbjct 16961 CGTACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCAGAGCACCATGGTACAAGGTCTC 17020 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AGAA 65550 ||| |||| | || || || | ||||| ||| |||||||| ||| | || | | Sbjct 17021 GAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGC-AATCTGAGCATGA 17079 Query 65551 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 65610 |||| || || | ||||||||||||| | |||||||||| | |||| | || ||| Sbjct 17080 AGAACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGT 17139 Query 65611 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGA 65667 | || ||||||| || || ||||| | || || | || | || | ||| Sbjct 17140 TGCGGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTGTGA 17199 Query 65668 CAA------TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA--ATCGCTCATCT-A 65718 ||| | | ||| || | || | |||| || || ||| || || | Sbjct 17200 CAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCAA-CAGTGATC-CTTGTCGGA 17257 Query 65719 TT--ACAAA--CATGTTCAATGCAACAGAT-GCCAGATTACAAACGGCTACCTCATTAGC 65773 | ||||| || | ||| |||| | | |||| ||||| || | ||||||| | Sbjct 17258 CTCAACAAATGCAGG--CAA-GCAAATGTTTGCCAAGTTACACACACCGACCTCATCTGG 17314 Query 65774 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 65833 | | || | | | |||| ||| | ||| | ||||||||||||| || || | Sbjct 17315 AGAAGAGTACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAGTTCTT 17374 Query 65834 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 65893 ||||||||||||| |||| || |||||||| |||| ||||| || ||||| ||||| | Sbjct 17375 TTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTTCTGT 17434 Query 65894 CTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGAT-TTGTATCTC 65951 ||||| || | |||| | ||| | | || ||||||| | | | || | || Sbjct 17435 CTGAGCCTCCAAAATCTGATACCACAACTTCT-GAGCCTTAACGGTTCTTCTTCCACGTC 17493 Query 65952 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011 | || | ||||| | || ||||| ||| |||||||| || |||||| | Sbjct 17494 CCTCCT-TCTCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATCTGAAAGA 17552 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCAC-TCTCCGTCATCCTTCA-CTCGTTTCA 66069 || || ||| ||| | | ||| | ||| | || | | |||| | || |||| Sbjct 17553 CCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCATT--TTGTTCAACACGCTTCA 17610 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 | || |||||||| |||||||||||| || ||||| | | | ||||| || | Sbjct 17611 TGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTCCTTAC 17670 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | |||||| | | ||||| ||| | | ||||| |||||| ||||| ||||| | Sbjct 17671 CGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAAGTAGA 17730 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || || | || || | ||||| || || || || | || ||||| || | || Sbjct 17731 TAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACTGTTGA 17790 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | || | | ||| ||||||||||||||||||||||| ||||| || | || || | Sbjct 17791 ACACACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTATGAAC 17850 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | | | |||||| ||| ||| |||||| || || || ||| | || || || || | Sbjct 17851 CTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAATCAAGG 17910 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | || |||| || || || ||||| || || ||| |||||| |||| || || | Sbjct 17911 CACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAACTAAGA 17970 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 | || ||||| || | || ||| || |||||||| || || ||||| ||||| | Sbjct 17971 AGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGCGTGTG 18030 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGA 66548 | || || | | || | | || |||| ||| | | || ||||| || | Sbjct 18031 TGAAGTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATCACCG- 18089 Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608 |||||||| || || || | ||| | | |||||||| || || | | ||| ||| Sbjct 18090 TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTCTGCAACCTTACCATTT 18149 Query 66609 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 66666 || |||||| || || || | || ||||| ||||| ||||| || ||||| | Sbjct 18150 ATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAGTAGTTATAGCTGAAA--T 18207 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 66726 | || || || |||| ||||||| | | |||||| | || | || ||| | | Sbjct 18208 CACGGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCTTCATGAC--AATC--TTG 18263 Query 66727 TAA--TACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAAT 66782 ||| | ||| || || || || || | ||| |||| || || ||||||| | Sbjct 18264 TAAACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTTGGGTTATAATAGTTGTAA 18323 Query 66783 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 | ||| || || || ||| ||| | || || || | ||||| | ||| || | ||| Sbjct 18324 AGATCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGCAAATTAGAAATGGCA 18383 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 | ||| ||||| | | | |||||||| ||||| Sbjct 18384 AGTCTGGCGGCCAAAGTAGCATAATCTGGATG 18415 >seq290 Length=58723 Score = 230 bits (254), Expect = 3e-55 Identities = 605/908 (67%), Gaps = 18/908 (2%) Strand=Plus/Plus Query 35846 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 35905 |||| | |||||| || || ||||| ||| || | || || || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 35906 TTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttt 35965 ||||| | || || || || ||||| || |||||||||||| || |||| |||| ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 35966 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACA-AATTCTATATATGTTTTCATCAT 36024 | | ||||||| || || |||||| || || ||| ||||| | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCAT 52954 Query 36025 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAA 36083 || | ||||| || | | |||||| ||||| || | ||||| |||| | ||| Sbjct 52955 ATCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAA 53013 Query 36084 TAGAGACCGCGTCTGTTATAATAGATATTACTGTTT-CTTCACTCGGTGGATACAATAAA 36142 || ||| || || || ||||| | ||| | | | | ||| ||||||| | ||| Sbjct 53014 TATTGACAGCCTCGGTCATAATTT-TCTTAATAATAACCTTACTAGGTGGATGCTTCAAA 53072 Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 || |||| | ||||||||||| ||||||||||| || || | ||| | || Sbjct 53073 TGAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCA 53132 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 ||||| || || ||||| ||||| | || | ||| || | ||| || || || ||||| Sbjct 53133 TTGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAAC 53192 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 36322 || ||||| ||||||| || || | || |||||||| | | |||||| |||| Sbjct 53193 GAGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAA 53252 Query 36323 GCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 ||| ||| | |||||| | |||||| ||||| | || | | || || Sbjct 53253 GCATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATG 53312 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 || | |||||||| || | |||| || || | || | | || || |||| Sbjct 53313 GTATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGT 53372 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 ||||| || | || || || ||||| |||| || || || ||||| || | Sbjct 53373 AAAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCT 53432 Query 36500 CTAGCCTC-GGTAATCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 36557 || || || |||||| || | || || | |||| || ||| || || || | || | Sbjct 53433 CTTGCTTCTGGTAAT-TGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAA 53490 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||| || |||||||| ||||| ||| | |||||| ||| | ||| |||| Sbjct 53491 TACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCG-TTGGCA 53549 Query 36618 TTAGT----TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 36673 || | || ||||| ||| | | || ||||| | ||| | || || | |||||| Sbjct 53550 TTCATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAA 53609 Query 36674 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 || || ||||| ||||| |||||||| | ||| || |||| || ||||| || || || Sbjct 53610 AAAGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATC 53669 Query 36734 ACAAATCT 36741 |||||||| Sbjct 53670 ACAAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164753837520