Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14 297 3e-75 seq290 205 1e-47 >seq14 Length=27313 Score = 297 bits (328), Expect = 3e-75 Identities = 1331/2074 (64%), Gaps = 61/2074 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| |||| | | |||| | ||||| | |||||||| || || || | | Sbjct 16365 GTGAATTGGATGGCACGAGCAGCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAA 16424 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCG-GATCTGCTA 78835 || |||| ||||| || ||||| ||| | || ||| | | ||| ||| | Sbjct 16425 CCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGAT-TGCAA 16483 Query 78836 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 78895 ||||| ||||| |||||| || ||| |||| || ||||| |||||||| | | Sbjct 16484 G-TGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGA 16542 Query 78896 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 ||| | || || | || |||||||| ||| | || | | |||||| | ||||||| Sbjct 16543 TGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAA 16602 Query 78956 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCAT 79012 || | || ||||||||||||||| || || || |||||| || | || | Sbjct 16603 TATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTGCATCGT 16662 Query 79013 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 |||||| | | || | | | || || | | ||||| || | || || || | Sbjct 16663 TCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCAC 16722 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 ||| | ||||| | || || ||| ||| |||| || | | || || | | Sbjct 16723 CAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAAC 16782 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 ||| ||| |||| || || || ||||||||||| || ||||| | ||||||||||| Sbjct 16783 CCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGAC 16842 Query 79193 CGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACA 79251 | | | | | ||| || | || | || ||||||||||| ||||||| || | Sbjct 16843 CATCCTTAGC-GATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGGCTTCTTA 16901 Query 79252 TTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAA 79311 ||||| | ||| || || |||||||| || ||| || ||| ||| || || || Sbjct 16902 TTCCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTAC 16961 Query 79312 GGTCCTTCCTTTTCGG----CTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 | || || | | | || ||| | || ||| | || || | || | ||| Sbjct 16962 GTACCCTCTTCCACAGAAAGCTGATTTG--ATTC--CTCCAGAGCACCATGGTACAAGGT 17017 Query 79368 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAG-A 79426 ||||| |||| | || || || | |||||| ||| |||||||| ||| | || | Sbjct 17018 CTCGAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGC-AATCTGAGCA 17076 Query 79427 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486 | |||| || || | ||||||||||||| | |||||||||| | |||| | || | Sbjct 17077 TGAAGAACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGG 17136 Query 79487 AAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC--- 79543 | | || ||||||| || || ||||| | || || | || | || | Sbjct 17137 AGTTGCGGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTG 17196 Query 79544 TGACTA------TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA 79597 |||| | | | ||| || | || | |||| || | | ||| | | Sbjct 17197 TGACAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCAAC--AGTGATCCTTGTC 17254 Query 79598 TTACA-AACATGTTCA---ACGCGACAGAT-GCCAGATTACAAACGGCTACCTCATTAGC 79652 || |||| | || | || | | | |||| ||||| || | ||||||| | Sbjct 17255 GGACTCAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCATCTGG 17314 Query 79653 ATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTG 79712 | | || | | | ||| ||| | || | |||| |||||||| || || | Sbjct 17315 AGAAGAGTACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAGTTCTT 17374 Query 79713 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAAT 79772 ||||||||||||| |||| || |||||||| |||| ||||| || ||||| ||||| | Sbjct 17375 TTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTTCTGT 17434 Query 79773 CTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCT 79831 ||||| || | |||| | ||| | | || ||||||| | | ||| | | | Sbjct 17435 CTGAGCCTCCAAAATCTGATACCACAACTTCT-GAGCCTTAACGGTT--CTTCTTCCACG 17491 Query 79832 TTTCTCTTTC--GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAA 79889 | ||| ||| ||| | || || || ||| |||||||| || ||||||| | Sbjct 17492 TCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATCTGAAAG 17551 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT---ACTCGTTT 79946 || || || |||| | | ||| | ||| | ||||| | | || || || Sbjct 17552 ACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCA---TGTATCATTTTGTTCAACACGCTT 17608 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 ||| || |||||||| |||||||||||| || | ||| | | | |||||| || Sbjct 17609 CATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTCCTT 17668 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || |||||| | | ||||| ||| | | ||||| | |||||| ||||| ||||| Sbjct 17669 ACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAAGTA 17728 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 || || || | || |||| ||||| || || || || | || ||||| || | || Sbjct 17729 GATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACTGTT 17788 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 | || | | ||| ||||||||||||||||||||||| ||||| || | || || Sbjct 17789 GAACACACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTATGA 17848 Query 80187 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || | | |||||| ||| ||| |||||| || || || ||| | || || || || Sbjct 17849 ACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAATCAA 17908 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || || |||| || || || ||||| || || || ||||| |||| || || Sbjct 17909 GGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAACTAA 17968 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 || || ||||| || | || ||| || |||||||| || || ||||| ||||| Sbjct 17969 GAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGCGTG 18028 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 80425 || || || | | |||| | || |||| ||| | | || ||||| || Sbjct 18029 TGTGAAGTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATCACC 18088 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 | |||||||| || || || | ||| | | |||||||| || || | | ||| || Sbjct 18089 G-TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTCTGCAACCTTACCAT 18147 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 80543 |||| |||||| || || || | || ||||| ||||| ||||| || ||||| Sbjct 18148 TTATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAGTAGTTATAGCTGAAA- 18206 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 80603 || || || || |||| ||||||| | | |||||| | || | || ||| | Sbjct 18207 -TCACGGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCTTCATGAC--AATC--T 18261 Query 80604 GGTGA--TACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 80659 || | | ||| || || || || || | ||| |||| || ||| ||||||| Sbjct 18262 TGTAAACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTTGGGTTATAATAGTTGT 18321 Query 80660 ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGG 80719 | | ||| || || || ||| ||| | || || || | |||||| | ||| || | || Sbjct 18322 AAAGATCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGCAAATTAGAAATGG 18381 Query 80720 CTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 | | ||||||||| ||| | |||||||||||||| Sbjct 18382 CAAGTCTGGCGGCCAAAGTAGCATAATCTGGATG 18415 >seq290 Length=58723 Score = 205 bits (226), Expect = 1e-47 Identities = 596/906 (66%), Gaps = 14/906 (2%) Strand=Plus/Plus Query 49648 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 49707 |||| | |||||| || || ||||| ||| || | || || || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 49708 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt 49767 || || |||| || || || ||||| || || || ||||||||| |||| |||| ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 49768 ttAAATCCCAATTCAGAAATCAATCTATCCGCGACA-AATTCTATATATGTTTTCATCAT 49826 | | ||||||| || || |||||| || || ||| ||||| | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCAT 52954 Query 49827 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA-AGAAATTCTTGTTCAA 49885 || | ||||| || | | |||||| ||||| || | ||||| |||| | ||| Sbjct 52955 ATCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAA 53013 Query 49886 TGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAAT 49945 | || || || || ||||| ||| | | | ||| ||||||||| |||| Sbjct 53014 TATTGACAGCCTCGGTCATAATTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAAT 53073 Query 49946 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGT 50005 | |||| | ||||||||||| || |||||||| || || | ||| || || | Sbjct 53074 GAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCAT 53133 Query 50006 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 50065 |||| || || ||||| ||||| | || | ||| || | ||| || || || ||||| | Sbjct 53134 TGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACG 53193 Query 50066 ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG 50125 | ||||| ||||| | || || | || |||||||| || | |||||| |||| | Sbjct 53194 AGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAG 53253 Query 50126 CGCTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 50182 | ||| | |||||| | |||||| ||||| | || | | || || | Sbjct 53254 CATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGG 53313 Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 50242 | | || ||||| || | |||| || || | || | | || || || | | Sbjct 53314 TATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTA 53373 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 50302 |||| || | || || || ||||| |||| ||||| || ||||| || || Sbjct 53374 AAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTC 53433 Query 50303 TAGCCTC-GGTAATCTGCA-CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTAT 50360 | || || |||||| || | || || | |||| || || || || || | || || Sbjct 53434 TTGCTTCTGGTAAT-TGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAAT 53491 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || ||| || |||||||| ||||| ||| | |||||| | | | ||||||| | Sbjct 53492 ACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATT 53551 Query 50421 TA---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477 | || ||||| ||| | | || ||||| | ||| | || || | |||||||| Sbjct 53552 CATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAA 53611 Query 50478 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 50537 || ||||| ||||| |||||||| | ||| || |||| || || || ||||| || || Sbjct 53612 AGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCAC 53671 Query 50538 AAATCT 50543 |||||| Sbjct 53672 AAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260019163920