Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq290 224 1e-53 >seq290 Length=58723 Score = 224 bits (248), Expect = 1e-53 Identities = 589/888 (66%), Gaps = 17/888 (2%) Strand=Plus/Plus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || || || ||| |||||| || |||||||||||||| ||||| ||| || || || Sbjct 52797 TTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTC 52856 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 13700 |||||||| || |||||||| | | | | ||||| ||||| || | | | || Sbjct 52857 TCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAAGC 52916 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13760 ||||| || ||| || |||| ||| || | ||| | ||| | |||||||| | | Sbjct 52917 AATCTGTCGGCACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAA 52976 Query 13761 TTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || || | || | | ||| |||| | | ||| |||||||| | ||||| Sbjct 52977 GAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAAT 53035 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | ||||||| | ||| ||| |||| || | ||| || | | || || || Sbjct 53036 TTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGAA 53095 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||| ||| || |||||||| || | |||||| || || || || || | ||| ||||| Sbjct 53096 ATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCAT 53155 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 ||| |||| || || ||||| || || | ||||| || || || ||||| | ||||| Sbjct 53156 CAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCTC 53215 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 | |||||||| || | |||| || || || | || | | || ||||||| | Sbjct 53216 GATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCT 53275 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||||| || |||| |||||| || || | |||||||| || || || Sbjct 53276 CAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATGGATAGCATTGAACAAGTA 53335 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAGCTA-TACATTTCAGAG 14177 || ||| || | | ||||| || |||| ||| ||| | || | |||||| Sbjct 53336 GTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTAA--AAGGGAGTAGGTCTCAGAG 53393 Query 14178 TGTATGTTTTC---CATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 || ||||| || |||| ||||| ||||| |||||| ||| ||||| | |||| Sbjct 53394 TGGATGTTCTCAACCATA---ATCTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGA 53450 Query 14235 ACTTCCGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 || | | | |||| ||| ||||| || || | ||| ||||||||| ||| ||||| Sbjct 53451 ACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAAA 53509 Query 14294 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTT---CATTGTTGAGTTTTTTCCAATC 14350 ||||||||| | ||||||||| ||| | |||| | || ||||| || Sbjct 53510 AAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCATCTTGTTGTTCCAGTC 53569 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 | || |||||||| ||||| | || ||| | ||||||||| || | || || || Sbjct 53570 AGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTT 53629 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 ||||||| |||||| || | || ||||| || | |||||||| Sbjct 53630 ATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722135325200