Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq290 255 6e-63 >seq290 Length=58723 Score = 255 bits (282), Expect = 6e-63 Identities = 614/914 (67%), Gaps = 15/914 (2%) Strand=Plus/Plus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 || || || ||| |||||| || ||||| |||||||| ||||| ||| || || || Sbjct 52797 TTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTC 52856 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 |||||||| ||||||||||| || | | | ||||| ||||| || | | ||||| Sbjct 52857 TCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGC-AATAAG 52915 Query 13489 -AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||||| || ||| || |||| ||| || | ||| | ||| | |||||||| | | Sbjct 52916 CAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAA 52975 Query 13548 TTTTACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 || || | || | | | ||| |||| | | ||| ||||||||| | |||| Sbjct 52976 AGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAA 53034 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 | |||||||||| | ||| ||| |||| || | ||| || | | || || | Sbjct 53035 TTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGA 53094 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 ||||| ||| || |||||||| || | |||||| || || || || || | ||| |||| Sbjct 53095 AATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCA 53154 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 |||| |||| || || ||||| || || | || || || || || ||||| | |||| Sbjct 53155 TCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCT 53214 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 | | |||||||| || | | || || || || | || | | || ||||||| Sbjct 53215 CGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATC 53274 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 | ||||||| || |||| |||||| || || | ||| |||||||| || | Sbjct 53275 TCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATGGATAGCATTGAACAAGT 53334 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA-TAAGTAAGCTA-TACATTTCAGA 13964 || ||| || | | ||||| || |||| ||| ||| | || | ||||| Sbjct 53335 AGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTAA--AAGGGAGTAGGTCTCAGA 53392 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||| ||||| || | ||||| ||||| ||||| ||| ||||||| |||| || Sbjct 53393 GTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGAAC 53452 Query 14025 CTCCGAG-TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 || | | |||| ||| ||||||||| || | ||||||||||||| ||| ||||||| Sbjct 53453 CTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAAAAA 53511 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTT---CATTGTTGAGTTTTTTCCAATCGG 14140 ||||||| | ||||||||| ||| | |||| | || ||||| || | Sbjct 53512 ATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCATCTTGTTGTTCCAGTCAG 53571 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 || |||||||| ||||| | || ||| | ||||||||| || | || || |||| Sbjct 53572 TCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTTAT 53631 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTT-TCT 14259 ||||| |||||| || | || ||||| || | ||||||| || ||||| || Sbjct 53632 ACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAATC-TGTGTATGTTCTCC 53690 Query 14260 TTAAGAATTGGCTC 14273 ||||| | ||||| Sbjct 53691 TTAAGCAAAGGCTC 53704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478582949251920