Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14 253 3e-62 seq290 230 3e-55 >seq14 Length=27313 Score = 253 bits (280), Expect = 3e-62 Identities = 709/1074 (66%), Gaps = 22/1074 (2%) Strand=Plus/Plus Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 ||||||||||||| || || | ||||||||||||| |||| || |||||||| |||| | Sbjct 17353 ACTTGATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCA 17412 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 71892 | || || ||||| ||||| |||||| || | |||| | ||| | | || ||||| Sbjct 17413 TGAAAGGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACAACTTCT-GAGCC 17471 Query 71893 TTTATTATA-TTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 71951 || | | ||||| | || | || | ||||| | || || || ||| ||||| Sbjct 17472 TTAACGGTTCTTCTTCCACGTCCCTCCT-TCTCGTAACGAGTGTACAACTTTTCAAACTC 17530 Query 71952 GTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCC 72011 ||| || || ||| | || || ||| ||| | | ||| | ||| | Sbjct 17531 GTCACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCA---TGT 17587 Query 72012 ATCATCATTT---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 72068 ||||| | | || || ||||| || |||||||| |||||||||||| || | ||| Sbjct 17588 ATCATTTTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATC 17647 Query 72069 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 72128 | | | |||||| || || |||||| | | ||||| ||| | | ||||| Sbjct 17648 ACGTGCACGGATCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATC 17707 Query 72129 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATC 72188 | |||||| ||||| ||||| || || || | || || | ||||| || || || || Sbjct 17708 TGCATGCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTC 17767 Query 72189 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 72248 | || ||||| || | || | || | | ||| ||||||||||||||||||| ||| Sbjct 17768 AACATACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACC 17827 Query 72249 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCC 72308 ||||| || | || || || | | |||||| || ||| |||||| || || Sbjct 17828 GTTGGTACCAGCAATGTATGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACC 17887 Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368 || ||| | || || || || || || |||| || || || ||||| || || ||| Sbjct 17888 ACCAGCCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGA 17947 Query 72369 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 |||||| |||| || || || || ||||| || | || ||| || ||||| Sbjct 17948 GTCATCCTTCATTGCAACTAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATT 18007 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 ||| || || ||||| ||||| || || || | | |||| | || |||| ||| | Sbjct 18008 AAACAATGTTGGAGAGGCGTGTGTGAAGTATCTCTTCGACATCAAATCATACGACTCCAA 18067 Query 72489 AGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAG 72547 | || ||||| || | || ||||| || || || | ||| | | |||||||| Sbjct 18068 AACTTTAGGAATATCATCACCG-TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAG 18126 Query 72548 GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 72607 | || || | | ||| |||||| |||||| || || || | || ||||| | Sbjct 18127 GCCTCTCTGCAACCTTACCATTTATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGC 18186 Query 72608 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 |||| ||||| || ||||| || || || || |||| |||| || | | |||||| Sbjct 18187 CAAAGTAGTTATAGCTGAAA--TCACGGTCATAGTTAATGGCCGAGTTCAACTCATCCTT 18244 Query 72666 ATATTTGTTAACTATATCCATGGTGA-TACTT--GAAATAATCGGAGAATGTTTCCCATT 72722 | || | || || | || | | ||| || || || || || | ||| | Sbjct 18245 GTGCTTCATGACAAT---CTTGTAAACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGT 18301 Query 72723 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 72782 ||| || ||| ||||||| | | ||| || || || ||| ||| | || || || | Sbjct 18302 TTTTGGGTTATAATAGTTGTAAAGATCTTCAATAACATCAGAGAATGGCTTCTTAGTCTG 18361 Query 72783 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 |||||| | ||| || | ||| | ||||||||| | | | |||||||||||||| Sbjct 18362 CTTGTGCAAATTAGAAATGGCAAGTCTGGCGGCCAAAGTAGCATAATCTGGATG 18415 Score = 113 bits (124), Expect = 6e-20 Identities = 352/534 (66%), Gaps = 11/534 (2%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGA-GAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAG 70859 || || || |||| | ||| | ||||| | ||||| | |||||||| ||||| || | Sbjct 16365 GTGAATTGGATGGCACGAGCA-GCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAA 16423 Query 70860 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAG-GATCGGCT 70917 ||| |||| |||||||| ||||| ||| | || |||| | | ||| | Sbjct 16424 ACCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGATTGC-- 16481 Query 70918 ATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 70977 | ||| || ||||| || ||| || ||| |||| || ||||| |||||||| | Sbjct 16482 AAGTGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCG 16541 Query 70978 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 71037 |||| | || || | || |||||||| ||| | || | | |||||| | |||||| Sbjct 16542 ATGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGA 16601 Query 71038 AGGTTTG-TA--TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCA 71094 | || | || ||||||||||||||| || ||| || ||| || || | || Sbjct 16602 ATATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTGCATCG 16661 Query 71095 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCT 71154 ||||||| | | || | | | || || | | |||||| || | || || || Sbjct 16662 TTCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCA 16721 Query 71155 CCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTT 71214 |||| | ||||| | || || ||| ||| | || || | |||| || | Sbjct 16722 CCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAA 16781 Query 71215 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGA 71274 |||| ||| |||| || || ||||| |||||||| || ||||| || |||||||||| Sbjct 16782 CCCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGA 16841 Query 71275 CCAT-GTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 |||| | | | ||| || | || | || ||||||| ||| ||||| | ||| Sbjct 16842 CCATCCTTAGC-GATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGG 16894 >seq290 Length=58723 Score = 230 bits (254), Expect = 3e-55 Identities = 603/907 (66%), Gaps = 16/907 (2%) Strand=Plus/Plus Query 41753 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTC 41812 |||| | |||||| || || ||||| ||| || | || || || || |||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 41813 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt 41872 || || |||| || || || ||||| || || || ||||||||| |||| |||| ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 41873 ttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATT 41932 | | ||||||| || || |||||| || || |||||| | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATA 52955 Query 41933 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAAT 41991 || | ||||| || | | |||||| ||||| || | ||||| |||| | |||| Sbjct 52956 TCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAAT 53014 Query 41992 AGAGACCGCGTCTGTTATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAAT 42050 | ||| || || || ||||| ||||| | | | | ||| ||||||| | |||| Sbjct 53015 ATTGACAGCCTCGGTCATAATTT-TCTTAATAATAACCTTACTAGGTGGATGCTTCAAAT 53073 Query 42051 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGT 42110 | |||| | ||||||||||| || ||||||||||| || | ||| | || | Sbjct 53074 GAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCAT 53133 Query 42111 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG 42170 |||| || || ||||| ||||| | || | ||| || | ||| || ||||| ||||| | Sbjct 53134 TGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACG 53193 Query 42171 ATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 42230 | ||||| ||||| | || || | || |||||||| | | |||||| |||| | Sbjct 53194 AGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAG 53253 Query 42231 CACTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 || ||| | |||||| | |||||| ||||| | || | | || || | Sbjct 53254 CATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGG 53313 Query 42288 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA 42347 | | || ||||| || | |||| || || | || | | || || || | | Sbjct 53314 TATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTA 53373 Query 42348 AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 42407 |||| || | || || || ||||| |||| ||||| || ||||| || || Sbjct 53374 AAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTC 53433 Query 42408 TGGCCTC-GGTAACCTGTA-CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTAT 42465 | || || ||||| || | || || | |||| || || || || |||| || || Sbjct 53434 TTGCTTCTGGTAA-TTGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAAT 53491 Query 42466 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGT 42525 || ||| || |||||||| ||||| ||| | |||||| ||| | |||| || | Sbjct 53492 ACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGT-TGGCAT 53550 Query 42526 TAAT----TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAA 42581 | || || ||||| ||| | | || ||||| | ||| | || || | ||||||| Sbjct 53551 TCATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAA 53610 Query 42582 ATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAA 42641 | || || || ||||| |||||||| | ||| ||||||| || ||||| ||||| || | Sbjct 53611 AAGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCA 53670 Query 42642 CAAATCT 42648 ||||||| Sbjct 53671 CAAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130995323280