Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq187 105 1e-17 seq14 96.9 5e-15 >seq187 Length=11729 Score = 105 bits (116), Expect = 1e-17 Identities = 378/584 (65%), Gaps = 14/584 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAAT-GCAATGTCACG 96865 || ||||| | |||| ||| |||| || |||||| | ||| ||| ||| || || | Sbjct 2074 ACCAACGGGACATCCAGCGGCATAGTTCCGATGCTCCGGGTGTTCAACAGCACTGCCAAG 2133 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 || || |||||||| || || ||||| || || || | || ||||| || || Sbjct 2134 -TATGTGGACCAGGGCGGAAACAAGCGGCCCGGTGCGATTTGTGCGTATTTGGAGCCGTG 2192 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||| || ||| | | || || |||| || |||||| ||| || ||| || Sbjct 2193 GCATGCAGACATCATGGAATTCCTCGATTTGAAGAAAAACCACGGCAAGGAGGAGATGCG 2252 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AA 97042 ||| |||| | || |||||| | ||| | || || ||||||||| ||| ||| || Sbjct 2253 GGCCCGGGATCTATTCTATGCATTGTGGATTCCCGACTTGTTCATGCGGCGGGTCGAGAA 2312 Query 97043 CGAC--GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| |||| ||||| || | | | ||| || | || || |||| || Sbjct 2313 GGACCAGGTG-----TGGAGTCTTTTCTCCGAGGACACGGCCCCGGGGTTGTCGGACACA 2367 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 ||||| | ||||| ||| | |||| | ||||||||||||||||| ||| | || Sbjct 2368 TGGGGGGCCGAGTTCGAGTCTCTGTACGAGCAATACGAGCAAGAGGGCCGGTACCTAAGG 2427 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | || | || || | | ||| || || ||| | ||| |||||||| || Sbjct 2428 CAGGTGAAGGCCCGTAAGGTCTGGGAGAGGATTGTGTACTCGCAGACGGAGACTGGGACA 2487 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGC-AACAGCAACCAACGCCACTTGGGCAC 97279 |||| || |||||||| ||| |||| | ||| || ||||||| || | ||||| Sbjct 2488 CCGTTTATGCTCTACAAAGAT-GCGTGCAACGCGAAATGCAACCAGAAGAACCTCGGCAC 2546 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 |||||| || ||||| ||| || | || |||||| | | ||| |||| || Sbjct 2547 GATCAAGTCGTCGAATCTCTGCTGCGAGGTGGTCGAGTACTCGTGCAAGGATGAGATCGC 2606 Query 97340 AGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAGG 97383 || ||| || | |||||| |||| | |||||| |||| Sbjct 2607 GGTGTGCAACCTCGGCTCGGTCGGGTTGCCGATGTTTGTGGAGG 2650 >seq14 Length=27313 Score = 96.9 bits (106), Expect = 5e-15 Identities = 212/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 97953 TGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACC 98012 |||||||||| ||| | || ||||| | ||||||| |||||||| ||| ||||| Sbjct 16666 TGGAACGATGCAATGAAGAATTTCATCATTCATGACAATGGATCCATTCAGAAC-TTACC 16608 Query 98013 -ATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGAC 98071 | || || || | | | | | |||| |||||| ||||| || | || | Sbjct 16607 TAATATTCCAGACAACATTAAGAAATTGTACAGGACTGTTTGGGAACTTTCTCAGAAATC 16548 Query 98072 GCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCT 98131 | ||||| ||||||||||||||||||| ||||||| |||| |||||| | || | Sbjct 16547 TGTCATCGACATGGCTGCCGACAGAGGTGCCTACATTTGCCAGTCTCAATCCATGAACAT 16488 Query 98132 GTACGTTGCCGAGCCCACCTACAGTCGTA---TGACTTCGATACACTTTTACGCATGGAA 98188 || |||| ||| ||| | ||| |||| || || |||||||||| ||||| Sbjct 16487 CCAC-TTGCAATCGCCAACTATGG--GTAAGTTGACGTCCATGCACTTTTACGGCTGGAA 16431 Query 98189 CAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACC 98248 ||||| | ||||| || |||||||| || | ||| || | || | |||||| | Sbjct 16430 GAAGGGTTTGAAGACAGGTATGTACTACTTGCGTACACAGGCCGCTGCTCGTGCCATCCA 16371 Query 98249 ATTTACGGTGGA 98260 ||| || || || Sbjct 16370 ATTCACCGTTGA 16359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050140551280