Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq290 116 3e-21 >seq290 Length=58723 Score = 116 bits (128), Expect = 3e-21 Identities = 535/841 (64%), Gaps = 11/841 (1%) Strand=Plus/Plus Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933 |||||| || ||||| ||||| || || || | || ||||| || |||||||| ||||| Sbjct 52811 AACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAA 52870 Query 12934 AGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAAC 12993 ||||| | | | || ||| | ||| || || | | | ||||||||| ||| Sbjct 52871 TGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAAGCAATCTGTCGGCACA 52930 Query 12994 AAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGC 13053 || || | || || ||| | ||| ||||||| || | || || || | ||| Sbjct 52931 GAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGC 52990 Query 13054 TTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTT 13113 || | | || | || || |||| || || ||| | | || | ||||| || Sbjct 52991 ATCACTCCAGAAAGTCTTCTCAATATTGACAGCCTCGGTCATAATTT-TCTTAATAATAA 53049 Query 13114 CTCTAAT-GGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATC 13172 | || | || |||| | ||| |||| | ||||| |||||| || | | Sbjct 53050 CCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGAAATCAGTATGTAGAC 53109 Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 | ||||| || | || ||||| || || || || || || ||||| | |||| || | Sbjct 53110 CCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCT 53169 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| || |||| |||||||| || || || || | || || | || ||||| | Sbjct 53170 TCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGG 53229 Query 13293 CTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTG 13352 | | ||| || ||| ||||| | || | | | | |||||| | ||||| | Sbjct 53230 CGACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAGAG 53289 Query 13353 CTTTTTGTTTAACGCAGTTCATATTTTCT--ATTGCGTTAAATAAATAAtttttttCCTT 13410 | |||| |||| || | || | | || || || || || || | ||||| Sbjct 53290 CCTTTTCCTTAAT--AGGTGGAATGGTATGGATAGCATTGAACAAGTAGTCGGACTCCTT 53347 Query 13411 ACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCAT 13470 |||| || || || || | || | | || | || || || || || || | Sbjct 53348 CTTGTCGGTGATGTACGTTTCAAGTAAAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAAC 53407 Query 13471 CGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT-CGGAGTAAAATC 13529 | || |||||||| ||||| ||| || |||| || ||||| | | | |||| Sbjct 53408 CATAATCTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGAACCTGCTTCATGAAAT- 53466 Query 13530 TTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCT 13589 ||| ||| ||||| |||| ||| || || ||| ||| |||||||| || | | || Sbjct 53467 TTTGTGCCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAAAAAATGCCAAAACACGCG 53526 Query 13590 TAATAAAttttttttCGTTTTCTGACAACTTTAA---CCAATCTGGAAAATCTTTTGATA 13646 ||||| | | | ||||| | || ||| ||| || | || || || || | Sbjct 53527 ATATAAAGTATCTCTCGTTGGCATTCATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGA 53586 Query 13647 AATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATAT 13706 ||| | ||||||| | ||||||||||| || | |||||||||||||| |||||||| Sbjct 53587 GATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTTATACATTTGCCATATAT 53646 Query 13707 C 13707 | Sbjct 53647 C 53647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430977262959156