Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq290 154 3e-32 seq208 113 1e-19 >seq290 Length=58723 Score = 154 bits (170), Expect = 3e-32 Identities = 387/581 (67%), Gaps = 18/581 (3%) Strand=Plus/Minus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||||||||| || || || ||| | | |||||||||| ||||| || |||| | Sbjct 53677 AGATTTGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTATAAGAAGGCGGAG 53618 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA---- 268815 || ||||||||||||| || || | ||||| ||| | ||||| | || ||||| Sbjct 53617 GCCTCTTTTTGGACTGCTGAGGAGATTGATCTCTCTAAGGACTTGACTGACTGGAACAAC 53558 Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 || | || ||| | || ||| |||||||| | || | || |||||||| | | Sbjct 53557 AAGATGAATGCCA-ACGAGAGATACTTTATATCGCGTGTTTTGGCATTTTTTGCCGCTTC 53499 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAG-AGGTACAGATTCCTG 268934 ||||||||| ||| |||| || | | | | || ||| | ||| |||| || | || | Sbjct 53498 TGATGGTATTGTTGACGAGAACTTGGCACAAAATTTC-ATGAAGCAGGTTCAATTACCAG 53440 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 |||| ||| |||||||| |||||||| | || || || || || |||| ||| Sbjct 53439 AAGCAAGAGCCTTTTACGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACCTACT 53380 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTA--TTTTC--T 269050 || ||| | || || || || || || || || ||||| | ||| | Sbjct 53379 CCCTTTTACTTGAAACGTACATCACCGACAAGAAGGA----GTCCGACTACTTGTTCAAT 53324 Query 269051 TCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC 269110 |||| || || | | | |||| || ||||||| ||| |||||||||| Sbjct 53323 GCTATCCATACCATTCCACCTATTAAGGAAAAGGCTCTATGGGCTTTGAGATGGATAAAC 53264 Query 269111 ---GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 ||| || || | || || || || || ||||| || | || ||| | ||| Sbjct 53263 AATGATGATGCTTTGTATGCTGAGAGATTGGTCGCCTTTGCTGCCATCGAGGGTGTTTTC 53204 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 || || || || |||||| ||||||| ||||||||||| ||||| | ||||| ||| | Sbjct 53203 TTCTCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCTGGACTT 53144 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || ||||| || || | || ||||||| || ||| |||| Sbjct 53143 ACCTTCTCCAATGAGCTTATTTGCAGGGATGAGGGTCTACA 53103 >seq208 Length=10633 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || |||||||| | |||||| || || || | || || || Sbjct 9482 GTTGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCG 9541 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| |||||||| || ||||| || |||||||| |||||| || Sbjct 9542 GCAAAGATCAATCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTG 9601 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || ||||||||||| || | || Sbjct 9602 ACATTGTCAATGGTGTCTGAAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTC 9661 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || || |||||||| Sbjct 9662 TTAACGAAAATTTGCATTTT 9681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151383972258424