Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq290 154 3e-32
seq208 113 1e-19
>seq290
Length=58723
Score = 154 bits (170), Expect = 3e-32
Identities = 387/581 (67%), Gaps = 18/581 (3%)
Strand=Plus/Minus
Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759
||||||||||| || || || ||| | | |||||||||| ||||| || |||| |
Sbjct 53677 AGATTTGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTATAAGAAGGCGGAG 53618
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA---- 268815
|| ||||||||||||| || || | ||||| ||| | ||||| | || |||||
Sbjct 53617 GCCTCTTTTTGGACTGCTGAGGAGATTGATCTCTCTAAGGACTTGACTGACTGGAACAAC 53558
Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875
|| | || ||| | || ||| |||||||| | || | || |||||||| | |
Sbjct 53557 AAGATGAATGCCA-ACGAGAGATACTTTATATCGCGTGTTTTGGCATTTTTTGCCGCTTC 53499
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAG-AGGTACAGATTCCTG 268934
||||||||| ||| |||| || | | | | || ||| | ||| |||| || | || |
Sbjct 53498 TGATGGTATTGTTGACGAGAACTTGGCACAAAATTTC-ATGAAGCAGGTTCAATTACCAG 53440
Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994
|||| ||| |||||||| |||||||| | || || || || || |||| |||
Sbjct 53439 AAGCAAGAGCCTTTTACGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACCTACT 53380
Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTA--TTTTC--T 269050
|| ||| | || || || || || || || || ||||| | ||| |
Sbjct 53379 CCCTTTTACTTGAAACGTACATCACCGACAAGAAGGA----GTCCGACTACTTGTTCAAT 53324
Query 269051 TCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC 269110
|||| || || | | | |||| || ||||||| ||| ||||||||||
Sbjct 53323 GCTATCCATACCATTCCACCTATTAAGGAAAAGGCTCTATGGGCTTTGAGATGGATAAAC 53264
Query 269111 ---GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167
||| || || | || || || || || ||||| || | || ||| | |||
Sbjct 53263 AATGATGATGCTTTGTATGCTGAGAGATTGGTCGCCTTTGCTGCCATCGAGGGTGTTTTC 53204
Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227
|| || || || |||||| ||||||| ||||||||||| ||||| | ||||| ||| |
Sbjct 53203 TTCTCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCTGGACTT 53144
Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268
|| ||||| || || | || ||||||| || ||| ||||
Sbjct 53143 ACCTTCTCCAATGAGCTTATTTGCAGGGATGAGGGTCTACA 53103
>seq208
Length=10633
Score = 113 bits (124), Expect = 1e-19
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || || |||||||| | |||||| || || || | || || ||
Sbjct 9482 GTTGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCG 9541
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | ||||| |||||||| || ||||| || |||||||| |||||| ||
Sbjct 9542 GCAAAGATCAATCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTG 9601
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || ||||| | || ||||||||||| || | ||
Sbjct 9602 ACATTGTCAATGGTGTCTGAAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTC 9661
Query 104543 TTTACAAATATCTGCATTTT 104562
|| || || || ||||||||
Sbjct 9662 TTAACGAAAATTTGCATTTT 9681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151383972258424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |