Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq290 167 2e-36 >seq290 Length=58723 Score = 167 bits (184), Expect = 2e-36 Identities = 585/907 (64%), Gaps = 13/907 (1%) Strand=Plus/Plus Query 21166 TTTTGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTT 21225 ||||| ||||| || || || || ||| |||||| || || || || || ||||| Sbjct 52778 TTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTT 52837 Query 21226 TCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATT 21285 || |||| || || |||||||| || |||||||| || || | | ||| | Sbjct 52838 ACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTC 52897 Query 21286 ACAACCCAGTTCTGATAAT-AATCTATCTGCTACA-AATTCTATATATTGACACATTAAT 21343 ||| |||| | |||| ||||| || || ||| ||||| | ||| || ||| | Sbjct 52898 ACATCCCAAAGCA-ATAAGCAATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCATA 52955 Query 21344 TCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATA 21403 || | |||||||| | ||| || || ||||| | || | |||| || || ||| Sbjct 52956 TCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCTCAATA 53015 Query 21404 GAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGT 21463 ||| || || || || || | || || ||||||| |||| | || || Sbjct 53016 TTGACAGCCTCGGTCATAATTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGA 53075 Query 21464 TTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTA 21523 |||| | ||||| |||||| ||| | ||| |||||||| | || | ||||| Sbjct 53076 GAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTG 53135 Query 21524 GAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT 21583 || || || | || ||||| || |||||||| || ||||| || || || ||||| | Sbjct 53136 GAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAG 53195 Query 21584 CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT 21643 || || ||||||| ||||| | ||||||||| || || |||| ||| | || || Sbjct 53196 CCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCA 53255 Query 21644 TCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 || | || ||||||| | |||||| |||||||| |||||| ||| ||| Sbjct 53256 TCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTA 53315 Query 21704 TCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762 | ||||| || || ||| | | | ||| ||||| ||| Sbjct 53316 TGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTG-TCGGTGATGTACGTTTCAAGTAA 53374 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 || | ||||| || || || || | | ||||| || |||||||| ||| Sbjct 53375 AAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCT 53434 Query 21823 TGCCTCTGAACATTGAACCT-CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 ||| |||| ||||||||| | || |||| ||| |||||||| || | || || | Sbjct 53435 TGCTTCTGGTAATTGAACCTGCTTCATGAAATT-TTGTGCCAAGTTCTCGTCAACAATAC 53493 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA 21941 ||||| ||||||||||||||||| | | |||||| |||| ||||| | || Sbjct 53494 CATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGC-ATTC 53552 Query 21942 AT----TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 || || ||||| || || || || || | ||| | || |||| |||||||| Sbjct 53553 ATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAA 53612 Query 21998 CTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 || ||||| |||||||| ||| ||||||| || || || || || ||| Sbjct 53613 GAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACA 53672 Query 22058 AACCTGT 22064 || |||| Sbjct 53673 AATCTGT 53679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531894297512720