Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq14 269 3e-67 seq290 208 9e-49 >seq14 Length=27313 Score = 269 bits (298), Expect = 3e-67 Identities = 1319/2069 (64%), Gaps = 51/2069 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| |||| | | |||| | ||||| | |||||||| || || || | | Sbjct 16365 GTGAATTGGATGGCACGAGCAGCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAA 16424 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG-GATCTGCTA 62112 || |||| |||||||| ||||| ||| | || ||| | | ||| ||| | Sbjct 16425 CCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGAT-TGCAA 16483 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 ||||| ||||| |||||| || ||| |||| || ||||| |||||||| | | Sbjct 16484 G-TGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGA 16542 Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 ||| | || || | || |||||||| ||| | || | | |||||| | ||||||| Sbjct 16543 TGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAA 16602 Query 62233 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62289 || | || ||||||||||||||| || || || |||||| || |||| | Sbjct 16603 TATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTGCATCGT 16662 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 |||||| | | || | | | || || | | ||||| || | || || || | Sbjct 16663 TCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCAC 16722 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 ||| | ||||| | || || ||| ||| | || || | |||| || | | Sbjct 16723 CAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAAC 16782 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 ||| ||| |||| || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 16783 CCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGAC 16842 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 | | | ||| || | || | || ||||||| ||| ||||| | || | | Sbjct 16843 CATCCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGG--CTTCTT 16900 Query 62530 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 62587 | || |||||||| || || || ||| | || || ||||| Sbjct 16901 ATTCCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTA 16960 Query 62588 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62647 | || || | | ||| || | | |||| | ||||| | || | ||| || Sbjct 16961 CGTACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCAGAGCACCATGGTACAAGGTCTC 17020 Query 62648 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG-AGAA 62706 ||| |||| | || || || | ||||| ||| |||||||| ||| | || | | Sbjct 17021 GAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGC-AATCTGAGCATGA 17079 Query 62707 TAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62766 |||| ||||| | ||||||||||||| | |||||||||| | |||| | || ||| Sbjct 17080 AGAACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGT 17139 Query 62767 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGA 62823 | || ||||||| || || ||||| | || || | || | || | ||| Sbjct 17140 TGCGGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTGTGA 17199 Query 62824 CAA------TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTA 62877 ||| | | ||| || | || | |||| || | | || | | | Sbjct 17200 CAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCAAC--AGTGATCCTTGTCGGA 17257 Query 62878 CA-AACATGTTCAAGGCAA-CAGATG----CCAGATTACAAACGGCTACCTCATTAGCAT 62931 | |||| | || ||||| || ||| ||| ||||| || | ||||||| | | Sbjct 17258 CTCAACAAATGCA-GGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCATCTGGAG 17316 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | || | | | |||| ||| | ||| | ||||||| ||||| || || | || Sbjct 17317 AAGAGTACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAGTTCTTTT 17376 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 ||||||||||| |||| || |||||||| |||| ||||| || ||||| ||||| ||| Sbjct 17377 GATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTTCTGTCT 17436 Query 63052 GAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGAT-TTGTATCTCCT 63109 ||| || | |||| | ||| | | || ||||||| | | | || | ||| Sbjct 17437 GAGCCTCCAAAATCTGATACCACAACTTCT-GAGCCTTAACGGTTCTTCTTCCACGTCCC 17495 Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 | || | ||||| | || ||||| ||| |||||||| || |||||| | || Sbjct 17496 TCCT-TCTCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATCTGAAAGACC 17554 Query 63170 AGGACATTCATCCGGACACATCAACGACCAC-TCTCCGTCATCCTTCA-CTCGTTTCATA 63227 || ||| ||| | | ||| | ||| | || | | |||| | || ||||| Sbjct 17555 TGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCATT--TTGTTCAACACGCTTCATG 17612 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || |||||||| |||||||||||| || | ||| | | | ||||| || || Sbjct 17613 AATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTCCTTACCG 17672 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 |||||| | | ||||| ||| | | ||||| | |||||| ||||| ||||| || Sbjct 17673 TGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAAGTAGATA 17732 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || || | || || | ||||| || || || || | || ||||| || | || | Sbjct 17733 GCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACTGTTGAAC 17792 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| ||||||||||| || ||| |||| |||||||| | || || || Sbjct 17793 ACACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTATGAACCT 17852 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 | | |||||| ||| ||| |||||| || || || ||| | || || || || || Sbjct 17853 GTAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAATCAAGGCA 17912 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 || |||| || ||||| |||||||| || || ||||| |||| || || || Sbjct 17913 CACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAACTAAGAAG 17972 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || ||||| || | || ||| || |||||||| || || ||||| ||||| || Sbjct 17973 CAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGCGTGTGTG 18032 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 63706 || || | | || | | || |||| ||| | | || ||||| || | || Sbjct 18033 AAGTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATCACCG-TG 18091 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 |||||| || || || | ||| | | |||||||| || || | | ||| ||||| Sbjct 18092 AATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTCTGCAACCTTACCATTTAT 18151 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 63824 |||||| || || || | || ||||| ||||| ||||| || ||||| || Sbjct 18152 CCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAGTAGTTATAGCTGAAA--TCA 18209 Query 63825 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 63884 || || || |||| ||||||| | | |||||| | || | || || | || Sbjct 18210 CGGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCTTCATGACAAT---CTTGTAA 18266 Query 63885 A-TACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 63941 | | ||| || || || || || | ||| |||| || ||| ||||||| | | | Sbjct 18267 ACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTTGGGTTATAATAGTTGTAAAGA 18326 Query 63942 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 64001 || || || || ||| ||| | || || || | |||||| | ||| || | ||| | | Sbjct 18327 TCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGCAAATTAGAAATGGCAAGT 18386 Query 64002 CTGGCGGCTAGAATGGCATAATCCGGATG 64030 |||||||| | | | |||||||| ||||| Sbjct 18387 CTGGCGGCCAAAGTAGCATAATCTGGATG 18415 >seq290 Length=58723 Score = 208 bits (230), Expect = 9e-49 Identities = 596/906 (66%), Gaps = 14/906 (2%) Strand=Plus/Plus Query 32992 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 33051 |||| | |||||| || || ||||| ||| || | || || || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 33052 TTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt 33111 || || |||| || || || ||||| || || || ||||||||| |||| |||| ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 33112 ttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATT 33171 | | ||||||| || || |||||| || || |||||| | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATA 52955 Query 33172 TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTA-AGAAATTCTTGTTCAAT 33230 || | ||||| || | | |||||| ||||| || | ||||| |||| | |||| Sbjct 52956 TCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAAT 53014 Query 33231 GGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATG 33290 || || || || ||||| ||| | | | ||| ||||||||| ||||| Sbjct 53015 ATTGACAGCCTCGGTCATAATTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATG 53074 Query 33291 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTT 33350 |||| | ||||||||||| || |||||||| || || | ||| || || || Sbjct 53075 AGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATT 53134 Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410 ||| || || ||||| ||||| | || | ||| || | ||| || || || || || || Sbjct 53135 GGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGA 53194 Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470 ||||| ||||| | || || | ||||||||||| | | |||||| |||| || Sbjct 53195 GCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGC 53254 Query 33471 GCTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33527 ||| | |||||| | |||||| ||||| | || | | || || || Sbjct 53255 ATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGT 53314 Query 33528 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 33587 | || ||||| || | |||| || || | || | | || || || | || Sbjct 53315 ATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTAA 53374 Query 33588 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33647 ||| || | || || || ||||| |||| ||||| || ||||| || ||| Sbjct 53375 AAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCT 53434 Query 33648 AGCCTC-GGTAATCTGTA-CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATT 33705 || || |||||| || | || || | |||| || ||||| || || | || || Sbjct 53435 TGCTTCTGGTAAT-TGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATA 53492 Query 33706 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33765 || ||| || |||||||| ||||| ||| | |||||| ||| | |||| ||| || Sbjct 53493 CCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGT-TGGCATT 53551 Query 33766 AGT----TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 | || ||||| ||| | | || ||||| | ||| | || || | |||||||| Sbjct 53552 CATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAA 53611 Query 33822 TGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAAC 33881 || ||||| ||||| |||||||| | ||| || |||| || || || ||||| || || Sbjct 53612 AGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCAC 53671 Query 33882 AAATCT 33887 |||||| Sbjct 53672 AAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939584470480