Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14 183 8e-41 seq15 140 8e-28 seq187 86.0 2e-11 >seq14 Length=27313 Score = 183 bits (202), Expect = 8e-41 Identities = 352/510 (69%), Gaps = 8/510 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | |||||| ||| ||||| || |||| ||||||||||| ||| Sbjct 18034 TTCACACACGCCTCTCCAACATTGTTTAATGCCGGTACTCCACGCCCACAGATGTCGTCT 17975 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||||||||| || || || || ||||||| ||||| | || | Sbjct 17974 TGCTTCTTAGTTGCAATGAAGGATGACTCTATTGAAGGTATCTACGACACTTTGAAACAG 17915 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 ||||| | |||||||||| || || || |||||| || || || || ||||| | Sbjct 17914 TGTGCCTTGATTTCCAAGACGGCTGGTGGTATTGGTCTACATATTCATAACATTCGTTCT 17855 Query 363726 ACAGAA-CAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 |||| || |||||| || || || ||| || ||||| | |||| ||| || Sbjct 17854 ACAGGTTCA--TACATTGCTGGTACCAACGG-TACATCCAATGGTATTATTCCTATGGTT 17798 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 |||||||| ||| |||||| ||||| || ||||| ||||| ||| | ||| || Sbjct 17797 CGTGTGTTCAACAGTACTGCTAGGTATGTTGACCAAGGTGGTAACAAGAGACCAGGTGCC 17738 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||||| || | || ||| ||||| ||||| ||||| || | || || |||| Sbjct 17737 ATTGCTATCTACTTAGAACCTTGGCATGCAGATATCTTTGACTTCATCGATATCAGGAAG 17678 Query 363904 AA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 || ||||| || ||||| | |||||||||||| ||||| || |||||| | |||| Sbjct 17677 AATCACGGTAAG-GAGGAGATCCGTGCACGTGATTTGTTCCCAGCTCTTTGGATCCCTGA 17619 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 | || |||||||| || || | | | | ||| | | |||| || || Sbjct 17618 TCTATTCATGAAGCGTGTTGAACAAAATGATACATGGACTTTGTTTTCTCCTTCTGAGGC 17559 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 ||||||||||| ||||| | |||||||| Sbjct 17558 CCCAGGTCTTTCAGATGTTTATGGTGACGA 17529 >seq15 Length=27206 Score = 140 bits (154), Expect = 8e-28 Identities = 372/549 (68%), Gaps = 26/549 (5%) Strand=Plus/Minus Query 111348 AAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTT 111407 ||||| ||| | | ||||| ||||||| ||| ||||||||| | | || | ||| Sbjct 9788 AAGGGCATTTTGCACGAACTCTTGTGGTTCATTTCAGGAAGTACAGACGGTAAAGTTCTT 9729 Query 111408 GCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTT 111467 ||| ||||| || | || ||||| |||||||| ||| | || | |||| || || Sbjct 9728 TCAGAGAAAAACGTTCATATCTGGGAAGGAAATGGTTCAAGAGAGTACTTAGACTCGATT 9669 Query 111468 GGTCTTGTCGACA-ACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCA 111526 || ||| |||| ||| |||| |||||| |||||| | || |||||||||||| | || Sbjct 9668 GGACTTACAGACAGACGT-GAAGATGATCTAGGACCAATATATGGATTTCAATGGAGGCA 9610 Query 111527 CTTTGGTGCAGACTACAA-AACCATG-CACGACTCATA-TGATTCACAGGGAACTGATCA 111583 ||||| ||||| ||||| || || |||| | ||| || | | ||| | ||| || Sbjct 9609 TTTTGGGGCAGAATACAAGGACTGTGACACGGATTATACTGGT--AAAGGCTA-TGACCA 9553 Query 111584 -ATTACAGAATGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATG 111641 ||| | | | | || | || ||||| ||| || || | ||| | || ||| | Sbjct 9552 GATTGC-GCACATTATCCA-CACATTAAAAACAAATCCTTATGATCGAAGAATAATTCTT 9495 Query 111642 AGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC 111701 |||||||| || || || |||| |||||| | ||||| || ||| | |||||| Sbjct 9494 TCAGCATGGAATCCTCCGGCCTTCAAAAAGATGGCATTACCACCTTGCCATGTCATGTGC 9435 Query 111702 CAGTTTTATG-----TACACGAC-GGGATGC----TTTCA--TGCCAAATGTATCAGCGA 111749 ||||| || | | || || || | || || | || || ||||||||| || Sbjct 9434 CAGTTCTACGTGAGTTTCAGAACTGGAAAGCCAAGGTTGAGTTGTCAGATGTATCAGAGA 9375 Query 111750 TC-TGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTG 111808 || ||| ||| |||||||||||||||| |||||||| || || || |||| || | Sbjct 9374 TCGTGC-GATGTTGGTCTTGGTGTTCCATTTAATATAGCTTCGTATGCTTTACTCACATA 9316 Query 111809 CTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGC 111868 | || || || || | ||||||| ||||| |||| ||||| |||||| | Sbjct 9315 TATGATTGCAATGGTTTGTGATATGGAACCGGGCGAATTTGTTCATGTTATGGGAGATTC 9256 Query 111869 GCATGTTTA 111877 ||| |||| Sbjct 9255 GCACATTTA 9247 >seq187 Length=11729 Score = 86.0 bits (94), Expect = 2e-11 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||| ||| | || | |||||||||||| || || | |||||||| || | Sbjct 3147 CGCAACTCGCTCTTGGTGGCCCTCATGCCCACGGCATCGACCTCGCAGATCCTGGGGTTC 3206 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 | ||||||||||| || | || ||| | || | || | ||||| || || || Sbjct 3207 ACGGAGTGCTTCGAGCCCATCACTTCCAACATCTACACGCGAAGAGTTCTCTCTGGCGAG 3266 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT-TTCCGACCGCGGGCTGTGGGGTG- 364909 | |||||| || ||| || ||| | ||||| ||| | | || |||||| || Sbjct 3267 CACCAGGTAGTCAACTCGTATCTCGTCGATGATCTAGACCGTCTG-GGCCTGTGGAATGC 3325 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969 ||| ||||||| || | || |||||||| || || || | ||| |||| | || | | Sbjct 3326 ACA-CATGAAGGACCAGATTATCGCCGCAAACGGCTCCATCCAGGACATAGCCGGCATCC 3384 Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATT 365028 | ||| || || | | ||||| ||||| ||||| || || || || | ||||| Sbjct 3385 CGGAACATACCAAACAACTCTACAAGACCGTCTGGGACATGTCGCAGAAGATC-ATCATT 3443 Query 365029 GATATGGCGGCCGATCG 365045 || ||||| ||||| || Sbjct 3444 GACATGGCTGCCGACCG 3460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303337268164796