Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq14 183 8e-41
seq15 140 8e-28
seq187 86.0 2e-11
>seq14
Length=27313
Score = 183 bits (202), Expect = 8e-41
Identities = 352/510 (69%), Gaps = 8/510 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| | |||||| ||| ||||| || |||| ||||||||||| |||
Sbjct 18034 TTCACACACGCCTCTCCAACATTGTTTAATGCCGGTACTCCACGCCCACAGATGTCGTCT 17975
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| | | ||||||||| || || || || ||||||| ||||| | || |
Sbjct 17974 TGCTTCTTAGTTGCAATGAAGGATGACTCTATTGAAGGTATCTACGACACTTTGAAACAG 17915
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725
||||| | |||||||||| || || || |||||| || || || || ||||| |
Sbjct 17914 TGTGCCTTGATTTCCAAGACGGCTGGTGGTATTGGTCTACATATTCATAACATTCGTTCT 17855
Query 363726 ACAGAA-CAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783
|||| || |||||| || || || ||| || ||||| | |||| ||| ||
Sbjct 17854 ACAGGTTCA--TACATTGCTGGTACCAACGG-TACATCCAATGGTATTATTCCTATGGTT 17798
Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843
|||||||| ||| |||||| ||||| || ||||| ||||| ||| | ||| ||
Sbjct 17797 CGTGTGTTCAACAGTACTGCTAGGTATGTTGACCAAGGTGGTAACAAGAGACCAGGTGCC 17738
Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903
||||||| || | || ||| ||||| ||||| ||||| || | || || ||||
Sbjct 17737 ATTGCTATCTACTTAGAACCTTGGCATGCAGATATCTTTGACTTCATCGATATCAGGAAG 17678
Query 363904 AA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962
|| ||||| || ||||| | |||||||||||| ||||| || |||||| | ||||
Sbjct 17677 AATCACGGTAAG-GAGGAGATCCGTGCACGTGATTTGTTCCCAGCTCTTTGGATCCCTGA 17619
Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022
| || |||||||| || || | | | | ||| | | |||| || ||
Sbjct 17618 TCTATTCATGAAGCGTGTTGAACAAAATGATACATGGACTTTGTTTTCTCCTTCTGAGGC 17559
Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGA 364052
||||||||||| ||||| | ||||||||
Sbjct 17558 CCCAGGTCTTTCAGATGTTTATGGTGACGA 17529
>seq15
Length=27206
Score = 140 bits (154), Expect = 8e-28
Identities = 372/549 (68%), Gaps = 26/549 (5%)
Strand=Plus/Minus
Query 111348 AAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTT 111407
||||| ||| | | ||||| ||||||| ||| ||||||||| | | || | |||
Sbjct 9788 AAGGGCATTTTGCACGAACTCTTGTGGTTCATTTCAGGAAGTACAGACGGTAAAGTTCTT 9729
Query 111408 GCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTT 111467
||| ||||| || | || ||||| |||||||| ||| | || | |||| || ||
Sbjct 9728 TCAGAGAAAAACGTTCATATCTGGGAAGGAAATGGTTCAAGAGAGTACTTAGACTCGATT 9669
Query 111468 GGTCTTGTCGACA-ACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCA 111526
|| ||| |||| ||| |||| |||||| |||||| | || |||||||||||| | ||
Sbjct 9668 GGACTTACAGACAGACGT-GAAGATGATCTAGGACCAATATATGGATTTCAATGGAGGCA 9610
Query 111527 CTTTGGTGCAGACTACAA-AACCATG-CACGACTCATA-TGATTCACAGGGAACTGATCA 111583
||||| ||||| ||||| || || |||| | ||| || | | ||| | ||| ||
Sbjct 9609 TTTTGGGGCAGAATACAAGGACTGTGACACGGATTATACTGGT--AAAGGCTA-TGACCA 9553
Query 111584 -ATTACAGAATGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATG 111641
||| | | | | || | || ||||| ||| || || | ||| | || ||| |
Sbjct 9552 GATTGC-GCACATTATCCA-CACATTAAAAACAAATCCTTATGATCGAAGAATAATTCTT 9495
Query 111642 AGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC 111701
|||||||| || || || |||| |||||| | ||||| || ||| | ||||||
Sbjct 9494 TCAGCATGGAATCCTCCGGCCTTCAAAAAGATGGCATTACCACCTTGCCATGTCATGTGC 9435
Query 111702 CAGTTTTATG-----TACACGAC-GGGATGC----TTTCA--TGCCAAATGTATCAGCGA 111749
||||| || | | || || || | || || | || || ||||||||| ||
Sbjct 9434 CAGTTCTACGTGAGTTTCAGAACTGGAAAGCCAAGGTTGAGTTGTCAGATGTATCAGAGA 9375
Query 111750 TC-TGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTG 111808
|| ||| ||| |||||||||||||||| |||||||| || || || |||| || |
Sbjct 9374 TCGTGC-GATGTTGGTCTTGGTGTTCCATTTAATATAGCTTCGTATGCTTTACTCACATA 9316
Query 111809 CTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGC 111868
| || || || || | ||||||| ||||| |||| ||||| |||||| |
Sbjct 9315 TATGATTGCAATGGTTTGTGATATGGAACCGGGCGAATTTGTTCATGTTATGGGAGATTC 9256
Query 111869 GCATGTTTA 111877
||| ||||
Sbjct 9255 GCACATTTA 9247
>seq187
Length=11729
Score = 86.0 bits (94), Expect = 2e-11
Identities = 214/317 (68%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791
|||||||| ||| | || | |||||||||||| || || | |||||||| || |
Sbjct 3147 CGCAACTCGCTCTTGGTGGCCCTCATGCCCACGGCATCGACCTCGCAGATCCTGGGGTTC 3206
Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851
| ||||||||||| || | || ||| | || | || | ||||| || || ||
Sbjct 3207 ACGGAGTGCTTCGAGCCCATCACTTCCAACATCTACACGCGAAGAGTTCTCTCTGGCGAG 3266
Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT-TTCCGACCGCGGGCTGTGGGGTG- 364909
| |||||| || ||| || ||| | ||||| ||| | | || |||||| ||
Sbjct 3267 CACCAGGTAGTCAACTCGTATCTCGTCGATGATCTAGACCGTCTG-GGCCTGTGGAATGC 3325
Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969
||| ||||||| || | || |||||||| || || || | ||| |||| | || | |
Sbjct 3326 ACA-CATGAAGGACCAGATTATCGCCGCAAACGGCTCCATCCAGGACATAGCCGGCATCC 3384
Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATT 365028
| ||| || || | | ||||| ||||| ||||| || || || || | |||||
Sbjct 3385 CGGAACATACCAAACAACTCTACAAGACCGTCTGGGACATGTCGCAGAAGATC-ATCATT 3443
Query 365029 GATATGGCGGCCGATCG 365045
|| ||||| ||||| ||
Sbjct 3444 GACATGGCTGCCGACCG 3460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303337268164796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |