Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq228 131 1e-25
seq208 127 1e-24
seq423 114 9e-21
>seq228
Length=9725
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 3338 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCAT 3397
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||| |||||||||||
Sbjct 3398 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 3432
Score = 107 bits (118), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 19943 ATTTCTCTCTCTT--CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGG 20000
||||| ||||||| |||||||||||||| |||||| |||| ||||||||| ||||||||
Sbjct 5366 ATTTCACTCTCTTTCCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTTGCTATCGG 5425
Query 20001 TCTCGCGGTAATATTTAGCCTTA 20023
|||| || |||||||||||||||
Sbjct 5426 TCTCTCGCTAATATTTAGCCTTA 5448
>seq208
Length=10633
Score = 127 bits (140), Expect = 1e-24
Identities = 168/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| |||||||| | ||| ||||| |||||||| ||||||||| || ||||| ||||
Sbjct 9450 TACCTCCTCTCAATCTCAAGACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAG 9509
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||||| | | || || || || || |||||||| || | | || ||||| | |
Sbjct 9510 ACAAAGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGTG 9569
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || ||| || |||||||| ||||| | | || ||| | || |
Sbjct 9570 GGATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTGTCTGAAGACTCCA 9629
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
| || || || ||||| |||||||||||||| || ||||| || ||||| |||
Sbjct 9630 CCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTTT 9682
>seq423
Length=50725
Score = 114 bits (126), Expect = 9e-21
Identities = 165/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
|||||||||||||| | ||| ||||| ||||||||| |||||| ||||| ||||| |||
Sbjct 3594 TTACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCA 3653
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
|||||| | |||| || || || || || ||||| || | | || ||||| |
Sbjct 3654 GACAAAGTTCTGCCGTCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGT 3713
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|| | || || ||||| || ||||| || ||||| | | ||| || | |||
Sbjct 3714 GGAATTCCCTCCTTGTCTTGGATCTTTTGTTTGACATTGTCAATAGTGTCGGAAGACTCA 3773
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || | || || || ||||| ||||| || || ||||| || ||||| ||
Sbjct 3774 ACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 3826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334943207638718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |