Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14 260 2e-64 seq290 239 6e-58 >seq14 Length=27313 Score = 260 bits (288), Expect = 2e-64 Identities = 1317/2069 (64%), Gaps = 51/2069 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| |||| | | |||| | ||||| | |||||||| || || || | | Sbjct 16365 GTGAATTGGATGGCACGAGCAGCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAA 16424 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG-GATCTGCTA 61967 || |||| |||||||| ||||| ||| | || ||| | | ||| ||| | Sbjct 16425 CCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTACCCATAGTTGGCGAT-TGCAA 16483 Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027 ||||| ||||| |||||| || ||| |||| || ||||| |||||||| | | Sbjct 16484 G-TGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGA 16542 Query 62028 TAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | | | || || | || |||||||| ||| | || | | |||||| | ||||||| Sbjct 16543 TGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAA 16602 Query 62088 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62144 || | || ||||||||||||||| || || || |||||| || |||| | Sbjct 16603 TATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGATGAAATTCTTCATTGCATCGT 16662 Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204 |||||| | | || | | | || || | | ||||| || | || || || | Sbjct 16663 TCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCAC 16722 Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264 ||| | ||||| | || || ||| ||| | || || | |||| || | | Sbjct 16723 CAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAAC 16782 Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324 ||| ||| |||| || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 16783 CCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGAC 16842 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62384 | | | ||| || | || | || ||||||| ||| ||||| | || | | Sbjct 16843 CATCCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCCCACAGATCAGTTGG--CTTCTT 16900 Query 62385 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 62442 | || |||||||| || || || ||| | || || ||||| Sbjct 16901 ATTCCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTA 16960 Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 | || || | | ||| || | | |||| | ||||| | || | ||| || Sbjct 16961 CGTACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCAGAGCACCATGGTACAAGGTCTC 17020 Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAG-AGAA 62561 ||| |||| | || || || | ||||| ||| |||||||| ||| | || | | Sbjct 17021 GAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGC-AATCTGAGCATGA 17079 Query 62562 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62621 |||| || || | ||||||||||||| | |||||||||| | |||| | || ||| Sbjct 17080 AGAACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGT 17139 Query 62622 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGA 62678 | || ||||||| || || ||||| | || || | || | || | ||| Sbjct 17140 TGCGGGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTGTGA 17199 Query 62679 CAA------TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATTA 62732 ||| | | ||| || | || | |||| || | | || | | | Sbjct 17200 CAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCAAC--AGTGATCCTTGTCGGA 17257 Query 62733 CA-AACATGTTCA---ATGCAACAGAT-GCCAGATTACAAACGGCTACCTCATTAGCATC 62787 | |||| | || | |||| | | |||| ||||| || | ||||||| | | Sbjct 17258 CTCAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCATCTGGAGA 17317 Query 62788 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 62847 | || | | | |||| ||| | ||| | ||||||||||||| || || | ||| Sbjct 17318 AGAGTACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAGTTCTTTTG 17377 Query 62848 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 |||||||||| |||| || |||||||| |||| ||||| || ||||| ||||| |||| Sbjct 17378 ATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTTCTGTCTG 17437 Query 62908 AGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGAT-TTGTATCTCTTT 62965 || || | |||| | ||| | | || ||||||| | | | || | || | Sbjct 17438 AGCCTCCAAAATCTGATACCACAACTTCT-GAGCCTTAACGGTTCTTCTTCCACGTCCCT 17496 Query 62966 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCA 63025 || | ||||| | || ||||| ||| |||||||| || |||||| || || Sbjct 17497 CCT-TCTCGTAACGAGTGTACAACTTTTCAAACTCGTCACCATAAACATCTGAAAGACCT 17555 Query 63026 GGACATTCATCCGGACACATCAACGACCAC-TCTCCGTCATCCTTCA-CTCGTTTCATAA 63083 || ||| ||| | | ||| | ||| | || | | |||| | || ||||| | Sbjct 17556 GGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCATT--TTGTTCAACACGCTTCATGA 17613 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 | |||||||| |||||||||||| || | ||| | | | ||||| || || Sbjct 17614 ATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCACGGATCTCCTCCTTACCGT 17673 Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||||| | | ||||| ||| | | ||||| | |||||| ||||| ||||| || | Sbjct 17674 GATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAAGTAGATAG 17733 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | || | || || | ||||| || || || || | || ||||| || | || | | Sbjct 17734 CAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACATACCTAGCAGTACTGTTGAACA 17793 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 | | | ||| ||||||||||||||||||||||| ||||| || | || || || Sbjct 17794 CACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTATGAACCTG 17853 Query 63324 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 | | |||||| ||| ||| |||||| || || || ||| | || || || || || | Sbjct 17854 TAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAATCAAGGCAC 17913 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 | |||| || || || ||||| || || ||| |||||| |||| || || || | Sbjct 17914 ACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAACTAAGAAGC 17973 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 | ||||| || | || ||| || |||||||| || || ||||| ||||| || | Sbjct 17974 AAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGCGTGTGTGA 18033 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63562 | || | | || | | || |||| ||| | | || ||||| || | ||| Sbjct 18034 AGTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATCACCG-TGA 18092 Query 63563 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 ||||| || || || | ||| | | |||||||| || || | | ||| ||||| Sbjct 18093 ATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTCTGCAACCTTACCATTTATC 18152 Query 63623 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63680 |||||| || || || | || ||||| ||||| ||||| || ||||| || | Sbjct 18153 CTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAGTAGTTATAGCTGAAA--TCAC 18210 Query 63681 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 63740 | || || |||| ||||||| | | |||||| | || | || ||| | |||| Sbjct 18211 GGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCTTCATGAC--AATC--TTGTAA 18266 Query 63741 --TACTT--GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA 63796 | ||| || || ||||| | | ||| |||| || || ||||||| | | | Sbjct 18267 ACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTTGGGTTATAATAGTTGTAAAGA 18326 Query 63797 TCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATT 63856 || || || || ||| ||| | || || || | ||||| | ||| || | ||| | | Sbjct 18327 TCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGCAAATTAGAAATGGCAAGT 18386 Query 63857 CTAGCGGCTAGAATGGCATAATCCGGATG 63885 || ||||| | | | |||||||| ||||| Sbjct 18387 CTGGCGGCCAAAGTAGCATAATCTGGATG 18415 >seq290 Length=58723 Score = 239 bits (264), Expect = 6e-58 Identities = 607/908 (67%), Gaps = 18/908 (2%) Strand=Plus/Plus Query 32349 TCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTT 32408 |||| | |||||| || || ||||| ||| || | || || || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 32409 TTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttt 32468 ||||| | || || || || ||||| || ||||||||||||||| |||| |||| ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 32469 ttAAATCCCAATTCAGAAATCAATCTATCTGCGACA-AATTCTATATATGTTTTCATCAT 32527 | | ||||||| || || |||||| || || ||| ||||| | ||| |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCAT 52954 Query 32528 TTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAA 32586 || | ||||| || | | |||||| ||||| || | ||||| |||| | ||| Sbjct 52955 ATCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAA 53013 Query 32587 TAGAGACCGCGTCTGTTATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAA 32645 || ||| || || || ||||| ||||| | | | | ||| ||||||| | ||| Sbjct 53014 TATTGACAGCCTCGGTCATAATTT-TCTTAATAATAACCTTACTAGGTGGATGCTTCAAA 53072 Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || |||| | ||||||||||| ||||||||||| || || | ||| | || Sbjct 53073 TGAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCA 53132 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 ||||| || || ||||| ||||| | || | ||| || | ||| || || || ||||| Sbjct 53133 TTGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAAC 53192 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 32825 || ||||| ||||||| || || | || |||||||| | | |||||| |||| Sbjct 53193 GAGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAA 53252 Query 32826 GCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 || ||| | |||||| | |||||| ||||| | || | | || || Sbjct 53253 GCATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATG 53312 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || | |||||||| || | |||| || || | || | | || || |||| Sbjct 53313 GTATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGT 53372 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 ||||| || | || || || ||||| |||| || || || ||||| ||| | Sbjct 53373 AAAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCT 53432 Query 33003 CTAGCCTC-GGTAATCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060 || || || |||||| || | || || | |||| || ||| || || || | || | Sbjct 53433 CTTGCTTCTGGTAAT-TGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAA 53490 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 | || ||| || |||||||| ||||| ||| | |||||| ||| | |||| ||| Sbjct 53491 TACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGT-TGGCA 53549 Query 33121 TTAGT----TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 33176 || | || ||||| ||| | | || ||||| | ||| | || || | |||||| Sbjct 53550 TTCATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAA 53609 Query 33177 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || ||||| ||||| |||||||| | ||| || |||| || ||||| || || || Sbjct 53610 AAAGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATC 53669 Query 33237 ACAAATCT 33244 |||||||| Sbjct 53670 ACAAATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624253848800