Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq208 161 2e-34 seq423 136 7e-27 seq187 100 5e-16 >seq208 Length=10633 Score = 161 bits (178), Expect = 2e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || || ||||| ||||||||||| || || || | || || ||||| Sbjct 9466 CAAGACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATC 9525 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || |||||||| ||||| || || | ||| || || || ||||| || || ||||| || Sbjct 9526 CTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGTGGGATTCCCTCCTTATC 9585 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || |||||| |||||| || |||||||||| || || || ||||||||||| || Sbjct 9586 CTGGATCTTTTGCTTGACATTGTCAATGGTGTCTGAAGACTCCACCTCCAAGGTGATAGT 9645 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| | |||||| ||||| || |||||| Sbjct 9646 CTTACCCGTCAAGGTCTTAACGAAAATTTGCATT 9679 >seq423 Length=50725 Score = 136 bits (150), Expect = 7e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || |||||||| || || ||||| || || || | || || || || Sbjct 3611 CAAAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTGCCGTC 3670 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || |||||||| || || || || | ||| || || || |||||||| || |||||||| Sbjct 3671 CTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTTGTC 3730 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| |||||| ||||| || || ||||| | || || || || | ||||||||| Sbjct 3731 TTGGATCTTTTGTTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCAAGGGTGATGGT 3790 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 || || || | ||||| ||||| || |||||| || || Sbjct 3791 CTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTTGATA 3830 >seq187 Length=11729 Score = 100 bits (110), Expect = 5e-16 Identities = 232/343 (68%), Gaps = 14/343 (4%) Strand=Plus/Minus Query 30905 GAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAAT 30964 |||||||||||||||||||| |||||||| | ||| | ||||| || || | |||||| Sbjct 3500 GAAGAGGTTCATGCTCTGTGATTGGTCAACGTAGGGAGCACGGTCGGCAGCCATGTCAAT 3441 Query 30965 GACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGA-TTGCCT--TGAGCTCAGGGTG 31021 || | ||||| |||| ||||| |||||||||||| ||| | | | || ||| Sbjct 3440 GATGATCTTCTGCGACATGTCCCAGACGGTCTTGTAGAGTTGTTTGGTATGTTCCGGGAT 3381 Query 31022 GATGCCAATGACACGTTGGATGGACCCCCCGTT---GGCAATAATCTGGTTCTTCATGGC 31078 | | | ||| | |||||||| ||||| ||| |||||||||| ||||||| Sbjct 3380 GCCGGCTATGTC---CTGGATGGA---GCCGTTTGCGGCGATAATCTGGTCCTTCATGTG 3327 Query 31079 CTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAA 31138 | |||| ||| || | || || ||||| || |||||| || || Sbjct 3326 TGCATTCCACAGGCCCAGACGGTCTAGATCATCGACGAGATACGAGTTGACTACCTGGTG 3267 Query 31139 CTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTA 31197 ||| |||| || | || |||| | || |||||||| ||||| | ||| ||| Sbjct 3266 CTCGCCAGAGAGAACTCTTCGCGTGTAGATGTTGGAAGTGATGGGCTCGA-AGCACTCCG 3208 Query 31198 CGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGC 31240 | |||| ||| |||| ||| ||||| |||||||| || || Sbjct 3207 TGAACCCCAGGATCTGCGAGGTCGATGCCGTGGGCATGAGGGC 3165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611133166160