Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq187 185 2e-41 >seq187 Length=11729 Score = 185 bits (204), Expect = 2e-41 Identities = 624/957 (65%), Gaps = 15/957 (2%) Strand=Plus/Minus Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTT-GCTGACGGGGCTGCCCTCGTAGGTCGGGT 244355 |||||||||||| |||| || | ||| || || | ||||| |||| | | |||| | Sbjct 3009 GCCCCACATGTCGTACTGGAGAACCCCGTTTGCCGCCGGGGA-GCCCCAGAATGTCGAAT 2951 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTTACAGCT--CTCGTCGAGGGCGGCGTAGTAGATGGT 244413 | || || || ||| ||||||| | | || || ||| ||||| |||| ||||||||| Sbjct 2950 AAGGGCCCTCCCGCCGGGCCAGGT--CCGCCGACTGGTCCAGGGCCGCGTGGTAGATGGT 2893 Query 244414 CTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCAT 244473 || |||||| ||||| | | ||| | || || | || | | | || | | Sbjct 2892 CTGGAAGATGGCTTTGTTGAGGCGGCGCGACTCAGGGCTGCCAAACGCGTACCGCAGCCT 2833 Query 244474 CATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 | || |||| ||||| ||||| || || | | | ||| ||||| ||| |||| || Sbjct 2832 GAAAAAAGCGTCTGCCAGGCCCTGGACACCAACTGCAACGGGCCTGTGCCGCGTGTTCGA 2773 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 || ||| || ||||| |||| ||||| ||||||||||||| Sbjct 2772 CACTCTGCACTCGTCCAGAGGGTACGCACCCACGTCTATCACGCGGTTGAGGTTGCGGAC 2713 Query 244594 GATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGAT 244653 | || | ||| || ||| ||| || | || | | ||| |||| | | | Sbjct 2712 AAGCACTCTGACCACATCGTGAAGCTTGTGCAGGTTGAAAAAA-AGGCCTCCTTGCCCGT 2654 Query 244654 GGTGATCCTCACAAAC-TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 || ||| |||||| ||| | |||| | | |||||||| || || | ||| | Sbjct 2653 CGTCCTCC--ACAAACATCGGCAACC-CGACCGAGCCGAGGTTGCACACCGCGATCTCAT 2597 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT 244772 || | | ||||| ||| | |||| |||||| || ||||||| ||||| |||| Sbjct 2596 CCTTGCACGAGTACTCGACCACCTCGCAGCAGAGATTCGACGACTTGATCGTGCCGAGGT 2537 Query 244773 GCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCT 244832 || || ||| | || |||||||| || || ||||||||||| || || ||| |||| Sbjct 2536 TCTTCTGGTTGCATTTCGCGTTGCACGCATCTTTGTAGAGCATAAACGGTGTCCCAGTCT 2477 Query 244833 CGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCT 244892 | ||| | | | | || | ||||| | | ||||| ||| ||| | | Sbjct 2476 CCGTCTGCGAGTACACAATCCTCTCCCAGACCTTACGGGCCTTCACCTGCCTTAGGTACC 2417 Query 244893 TGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTC-GTCT 244951 ||||||| |||||| | |||||| | ||||||||||| ||||| || | | Sbjct 2416 GGCCCTCTTGCTCGTATTGCTCGTACAGAGACTCGAACTCGGCCCCCCATGTGTCCGACA 2357 Query 244952 AGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGC 245011 | ||||||| || || | | | ||||||||| | | | | || ||||| | || Sbjct 2356 ACCCCGGGGC-CGTGTCCTCGGAGAAAAGACTCCACACCTGGTCCTTCTCGACCCGCCGC 2298 Query 245012 ATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAG 245071 ||||| | |||||| ||||| | || | ||| || |||| || || | ||| ||| | Sbjct 2297 ATGAACAAGTCGGGAATCCACAATGCATAGAATAGATCCCGGGCCCGCATCTCCTCCTTG 2238 Query 245072 CCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAG 245131 || ||| ||| ||| || | || || | || ||| | ||||| ||||||| || Sbjct 2237 CCGTGGTTTTTCTTCAAATCGAGGAATTCCATGATGTCTGCATGCCACGGCTCCAAATAC 2178 Query 245132 ACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGC-GTT 245190 || | || |||||||||||||| || |||||||||| ||| || || || ||| Sbjct 2177 GCACAAATCGCACCGGGCCGCTTGTTTCCGCCCTGGTCCA-CATACTTGGCAGTGCTGTT 2119 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 ||| | || || | || ||||||||| | || |||||||||||| ||||| Sbjct 2118 GAACACCCGGAGCATCGGAACTATGCCGCTGGATGTCCCGTTGGTGCCCGAAATGTA 2062 Score = 143 bits (158), Expect = 5e-29 Identities = 317/472 (67%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 243741 TGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGT 243799 |||||| || || || || |||||||| |||||||| |||||||||||||||||| | Sbjct 3618 TGAACTTGATGGCCTGGGA-GGCGGCCTGGGTCCTCAAGTAGTACATGCCGGTCTTCAAG 3560 Query 243800 CCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCG 243859 || || |||||| | || ||||||| |||| ||| |||| | | | Sbjct 3559 CCCTTGTGCCAGGCATAGAAGTGCATGCTGGTCATCTTGGC------GAGCGT---GCAG 3509 Query 243860 TCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG 243919 |||| | || |||||||| | | ||| ||||| ||| |||| || || || || Sbjct 3508 TCCTTG---AGGAAGAGGTTCATGCTCTGTGATTGGTCAACGTAGGGAGCACGGTCGGCA 3452 Query 243920 GCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 |||||| |||| | |||||| || || || | | |||||||||| | ||| Sbjct 3451 GCCATGTCAATGATGATCTTCTGCGACATGTCCCAGACGGTCTTGTAGAGTTGTTTGGTA 3392 Query 243980 TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 || || |||| || | |||| ||| | ||||| || | |||| | |||| | Sbjct 3391 TGTTCCGGGATGCCGGCTATGTCCTGGATGGAGCCGTTTGCGGCGATAATCTGGTCCTTC 3332 Query 244040 ATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACC 244099 |||| | ||||||||||||| || || || | ||||| || | | ||| || ||| Sbjct 3331 ATGTGTGCATTCCACAGGCCCAGACGGTCTAGATCATCGACGAGATACGAGTTGACTACC 3272 Query 244100 TGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTC 244159 || ||| || || || || | ||| ||||| |||| ||| ||||||| || | Sbjct 3271 TGGTGCTCGCCAGAGAGAACTCTTCGCGTGTAGATGTTGGAAGTGATGGGCTCGAAGCAC 3212 Query 244160 TCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 |||||| ||||| ||||||| || || || |||||| | | ||||| Sbjct 3211 TCCGTGAACCCCAGGATCTGCGAGGTCGATGCCGTGGGCATGAGGGCCACCA 3160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944327655453280