Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq208 159 8e-34 seq423 114 3e-20 >seq208 Length=10633 Score = 159 bits (176), Expect = 8e-34 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| ||||| ||||||||||||| ||||||||||| |||||| || || Sbjct 9463 TCTCAAGACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCC 9522 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| |||||| ||||| ||||| | | |||||| || || ||||| || Sbjct 9523 ATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGTGGGATTCCCTCCTT 9582 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| ||||||||||| || || | |||||||| | || || ||||| ||||| Sbjct 9583 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTGTCTGAAGACTCCACCTCCAAGGTGAT 9642 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||||||||| | || || || |||||||| |||||| Sbjct 9643 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTG---CATTTT 9681 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| ||||| ||||||||||| ||||| || |||||| | || |||||| |||| || Sbjct 9549 ATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCTGACTACAACATCCAAAAG 9490 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024 ||||| ||||||||| | || |||||| Sbjct 9489 GAGTCAACTCTTCACTTGGTCTTGAGA 9463 >seq423 Length=50725 Score = 114 bits (126), Expect = 3e-20 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| |||||||| || | ||||||||||| |||||| || || Sbjct 3608 TCTCAAAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTGCC 3667 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 || |||| |||||| || || ||||| | | |||||| || || |||||| || Sbjct 3668 GTCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTT 3727 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || |||||||| || || || | ||||| | | || || || | ||||| Sbjct 3728 GTCTTGGATCTTTTGTTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCAAGGGTGAT 3787 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||||||| || | ||| || || |||||||| |||||| Sbjct 3788 GGTCTTACCGGTCAAAGTCTTAACGAAAATTTG---CATTTT 3826 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || ||||||||||| || || || |||||| | || |||||| | ||||| Sbjct 3694 ATCTTTGCTGGTAAGCAGTTGGAGGACGGCAGAACTTTGTCTGACTACAACATTCAGAAG 3635 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGA 201024 ||||| ||||||||| | ||||||||| Sbjct 3634 GAGTCCACTCTTCACTTGGTTTTGAGA 3608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178906827375526