Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq66 206 1e-47 seq423 143 1e-28 seq208 132 2e-25 seq675 123 1e-22 seq223 98.7 4e-15 seq334 86.0 2e-11 >seq66 Length=19490 Score = 206 bits (228), Expect = 1e-47 Identities = 848/1315 (64%), Gaps = 38/1315 (3%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 |||||||| | ||||| || | || || ||||| || || || | || |||||| Sbjct 4062 GGAAAGCCAAAGATTCAGGTGGAGTACAAGGGTGAGACGAAGGTGTTCACACCAGAAGAA 4121 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 ||||| || |||||| | ||||| |||| | ||||| || ||| | || Sbjct 4122 ATTTCTTCCATGGTTTTGACTAAGATGAGAACTACAGCCGAGGCTTATTTGGGAGAGAAG 4181 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||| || |||| ||||| ||||||||||| ||| | || | || |||||| Sbjct 4182 GTGAAGGATGCCGTGGTTACCGTTCCTGCTTATTTCAACGATTCGCAGAGACAGGCAACT 4241 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || ||||| ||||| || || | |||||||||| || ||||| || Sbjct 4242 AAAGATGCTGGTACCATTGCCGGTTTGAACGTGATGAGAATTATTAACGAGCCTACCGCT 4301 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCA-AAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 || ||| | || ||||| | | | || | || | || | || || ||| | || | Sbjct 4302 GCAGCTATTGCTTATGG-TTTGAATAAGGAGAAGGGAAGCGGTGAGAAGAATGTGTTGAT 4360 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 || ||||| ||||| || ||| ||| |||| | | || || || || || |||| Sbjct 4361 CTTCGATTTGGGTGGTGGTACTTTCGATGTTTCTCTTTTGTCCATCGATGAGGGTATATT 4420 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA-A 451610 ||| || ||||| || |||||||| ||| |||| ||||| || ||||||| || | Sbjct 4421 TGAGGTCAAGGCCACTGCAGGTGATACCCATTTAGGTGGTGAGGACTTTGATAA--CAGA 4478 Query 451611 TTGTGGAAT--GGTTGAAAACTGATGTTCAACGAAA--ACTAAAAGTAGATATTTCTACT 451666 ||| | | ||| || ||| || | |||| || | ||| || || || Sbjct 4479 TTGGTTACTCACTTTGCTAA-TGAATTTAAGAGAAAGTACCACAAG--GACATGACTGGC 4535 Query 451667 AACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGT 451726 ||||| | |||| | ||| | | | ||| || || | ||| || | ||| | | Sbjct 4536 AACCAGAGAGCATTGAGAAGATTAAGAACCGCATGCGAGAGAGCCAAGAGAACATTATCT 4595 Query 451727 ---TCAACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGA-TTATGC 451782 ||| ||||||| | | | ||||| ||| || || || || || | | Sbjct 4596 TCCTCAGCACAAACATC---CGTTGAGATTGACTCTTTGTACGAGGGTATTGACTTCTAC 4652 Query 451783 TACTACTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGTA-- 451840 || | |||| | || | |||||| | |||| | ||| || | | || | Sbjct 4653 -ACATCAATTACGAGAGCAAGATTTGAGGAACTTTGCT-CAG-ATCTGTTCAGATCCACT 4709 Query 451841 ATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAA 451900 || | || || || |||| || ||||| || || || | | |||| ||||| Sbjct 4710 CTGGACCCCGTCGAAAAAGTTTTGAGAGATTCAAAGCTTGACAAGGCTCAAATAGATGAG 4769 Query 451901 ATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTAT 451960 ||||||||||| || ||||| ||| ||||||| || || || | || | || ||| Sbjct 4770 ATTGTGCTTGTCGGTGGTTCCACAAGAATTCCAAAGATCCAGAAGTTGGTTTCCGATTAC 4829 Query 451961 TTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCT 452020 || || || | | | ||| | | || |||||||| ||||||||||| |||||| Sbjct 4830 TTCAACGGCAAGGAGCCAAACAAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCT 4889 Query 452021 GCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA----TGAAA-AATTAGGAGATATTC 452075 |||||||| || || ||| | || ||| ||||| | ||| | | |||| | | Sbjct 4890 GCAGTTCAGGCTGCCATTTTGACTGGT---GATGAATCGTCAAAGACTCAGGACTTGT-- 4944 Query 452076 TGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTA 452135 || | | ||||| ||||| |||| | || |||| || || ||||| ||||||| | Sbjct 4945 TGCTTTTGGATGTTACACCATTATCGTTGGGTATTGAGACCGCCGGTGGTGTGATGACAA 5004 Query 452136 ATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAA 452195 | || ||| | || || | |||||||| || | |||| | || | | || | | Sbjct 5005 AGTTGATTCCAAGAAACTCTACAATTCCTTGCAAGA--AGTCGGAGATCTTCTCCACCTA 5062 Query 452196 --GTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACG 452253 ||||||||| |||||||| ||||| |||| || || || | | | || Sbjct 5063 TGCTGATAACCAGCCAGGTGTTTTGATTCAGGTGTACGAGGGTGAGAGAACCAGAACCAA 5122 Query 452254 AGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAAC 452313 || || || |||| | ||| | | ||||| ||| ||||| || Sbjct 5123 GGACAACAACTTGTTAGGTAAGTTTGAGTTGACTGGAATTCCACCTGCACCAAGAGGTGT 5182 Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 ||| || ||||| |||||| |||| | || ||||| ||||| | ||||| |||||| Sbjct 5183 TCCCCAGATTGAGGTTACCTTTGATATCGACGCAAACGGTATCTTGAATGTTTCTGCAGT 5242 Query 452374 TGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATC 452433 ||| || | || || || | || || || ||||| ||||| || | | || || Sbjct 5243 TGAGAAGGGTACCGGTAAGTCCCAGAAGATCACCATTACGAATGACAAGGGCAGATTGTC 5302 Query 452434 TAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGAT 452488 || || || ||||| || ||||| ||| || || || ||||||| ||| ||| Sbjct 5303 AAAGGAGGAGATTGACAAGATGGTCTCTGAGGCTGAGAAGTTCAAGGCTGAGGAT 5357 >seq423 Length=50725 Score = 143 bits (158), Expect = 1e-28 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 391037 ATATTATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGA 391096 |||| ||| | |||| | ||||||||||| || |||| ||||| || || || ||||| Sbjct 3836 ATATCTTATCAAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACCATCACCCTTGA 3777 Query 391097 TGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAAT 391156 ||||| || || || | ||||| | | |||||||| || ||||| ||||| ||||| Sbjct 3776 GGTTGAGTCTTCCGACACTATTGACAATGTCAAACAAAAGATCCAAGACAAGGAGGGAAT 3717 Query 391157 TCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTT 391216 ||| |||||||| || | || || || | || || || | || || || |||||||| Sbjct 3716 TCCACCTGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGACGGCAGAACTTT 3657 Query 391217 GGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 | | || || || ||| | ||||| | || |||||||| || || ||| ||||||| Sbjct 3656 GTCTGACTACAACATTCAGAAGGAGTCCACTCTTCACTTGGTTTTGAGATTGAGAGG 3600 >seq208 Length=10633 Score = 132 bits (146), Expect = 2e-25 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || |||| ||||| ||||| || | || || || || || Sbjct 9679 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 9620 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || ||||| || || |||||||| ||||| || |||||||| Sbjct 9619 AGACACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 9560 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | || || || | || ||||| ||||||||| | || || || Sbjct 9559 GCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCTGACTACAA 9500 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| |||| |||||||| || || ||| |||||||| Sbjct 9499 CATCCAAAAGGAGTCAACTCTTCACTTGGTCTTGAGATTGAGAGGA 9454 >seq675 Length=37359 Score = 123 bits (136), Expect = 1e-22 Identities = 205/292 (70%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| || |||| || ||||||| || || |||||||||||||| ||| | || || || Sbjct 23087 AGTCACCCATGCGGTCGTTACTGTCCCTGCATATTTCAATGATGCTCAAAGACAGGCCAC 23028 Query 451372 TAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 |||||||| || ||| ||||| || || |||||||| ||||| | || || ||||| | Sbjct 23027 CAAAGATGCCGGTACA-ATTGCAGGCTTGAATGTTCTCAGAATTGTGAACGAGCCTACCG 22969 Query 451431 CAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAG 451490 | |||||| | || ||||| | ||| || | ||||| ||| | || | | Sbjct 22968 CTGCTGCTATTGCTTATGG-TTTGGA-----TAAGGGTGATGAAGAGAAACAGATCATTG 22915 Query 451491 TATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTAT 451550 | | || || |||||||||||| |||| |||| | || || |||| | ||| | | Sbjct 22914 TTTACGACTTGGGTGGAGGAACTTTTGATGTTTCTCTTCTGTCGATTGCCGGTGGAGCCT 22855 Query 451551 TTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||||||| ||| || ||||||||||| | || ||||| || |||| Sbjct 22854 TTGAAGTTTTGGCCACTGCAGGTGATACTCACTTGGGTGGTGAGGACTTTGA 22803 >seq223 Length=129710 Score = 98.7 bits (108), Expect = 4e-15 Identities = 196/290 (68%), Gaps = 19/290 (7%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| |||||||| || ||| | ||| | || ||||||||| ||| Sbjct 87602 GCTGTGATAACAGTTCCAGCTTATTTTAACGATTCTCAAAGACAGGCAACTAAAACTGCG 87543 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | | | |||||||||||| | ||||| | |||||||||||||| || | || Sbjct 87542 GGCGAGTTGGTTGGTTTAAATGTCGTGAGAATTGTGAATGAACCTACAGCTGCATCACTT 87483 Query 451442 GCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaa----aaTATTTTAGTATTTGA 451497 || ||||| || || ||||| || || | | ||| | || Sbjct 87482 GCCTATGGTCT-------------TAACCAGAATAAGAATGGCACGGTCGCAGTGTACGA 87436 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA-ATTGAAGATGGGGTATTTGAAG 451556 ||| ||||| || ||| ||||| || | ||| | || || ||||| || ||||| | Sbjct 87435 TTTGGGTGGTGGTACTTTTGATATCTC-GATCTTGGATATAGATGATGGTGTTTTTGAGG 87377 Query 451557 TAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 | | |||||||||| ||||| ||| ||||||| || ||| | || ||| Sbjct 87376 TGAGATCAACCAATGGGGATACACATTTAGGAGGCGAGGATTTCGACAAT 87327 >seq334 Length=126124 Score = 86.0 bits (94), Expect = 2e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867 ||||| || |||||||| | ||||||||||| |||| |||||| || || || || || Sbjct 85414 GTAAACACGACAGTTTTAGCAGGCATATTTAATCCAATAGAAAAGGTCTCTGTAGCAAAA 85473 Query 420868 AAAACTTTAATTAAt--ttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAA 420925 | || || | ||| || || |||||| |||||| | ||||| || || || || | Sbjct 85474 AGTACCTTCAAGAATCCTTCTTGGAATAA--AATTTCTATGATTTCCTTCAATATTGGTA 85531 Query 420926 TTATACCAGAATGATGATATGCC-ACACCTCT 420956 | ||||||||||||| ||||| | |||||| Sbjct 85532 GCAAACCAGAATGATGA-ATGCCTATACCTCT 85562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975693643013624