Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 226 3e-54 seq290 84.2 3e-11 >seq14 Length=27313 Score = 226 bits (250), Expect = 3e-54 Identities = 918/1426 (64%), Gaps = 39/1426 (3%) Strand=Plus/Plus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 ||||||||| ||||| || || || ||||||| |||||||||| | ||| | || Sbjct 16704 TTGACAATCTGGAACTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGGC 16763 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 |||||||| || || | ||||| || || | ||| ||||| |||||||| || || | | Sbjct 16764 TCAAAGCACTCGTTGTAACCCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGACC 16823 Query 106016 AAAAGACTGTTACGAAGACCCTTTTCCTT---GATGCGTTCCTTGAGAACATCCCAGTCG 106072 ||||| || | |||||| | |||| ||| |||| | | ||||| || Sbjct 16824 AAAAGCGAATTTCTAAGACCAT---CCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCC 16880 Query 106073 TA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 | | | || |||| ||| |||| ||||||| | || || | || | ||| | | Sbjct 16881 CACAGATCAG-TTGGCTTCTTATTCC-ACATATCGTACTGGAGAATACCCTTGGAAGCTG 16938 Query 106131 GAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCA 106190 |||| || || | ||||| || | ||| | | ||| | | | |||||| Sbjct 16939 GAGAGCCTTCGTAGGTCTCGTACGTACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCA 16998 Query 106191 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 106250 | | | || |||| ||| || || || | || | ||| ||||| | | Sbjct 16999 GAGCACCATGGTACAAGGTCTCGAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGT 17058 Query 106251 CAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 106310 |||||| | | | || | || |||||| |||||||||||||| | | | |||| Sbjct 17059 CAAATGGCAATCTGAGCATGAAGAACGTATCCGCAAGACCTTGAACACCAAGAGCGATAG 17118 Query 106311 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATG 106369 |||||| || ||| || || || || || ||| ||| || || |||| ||||||||| Sbjct 17119 GTCTGTTTCTCATGTTGGAGTTGCGGGCC-TCTGGAACTGGGTAGTAATTCCTGTCAATG 17177 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT----- 106424 || ||||| | || || |||| ||| ||||| | || | || ||| | | Sbjct 17178 ACACGGTTCAAGTTACGTGTGACAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAAC 17237 Query 106425 CAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGC 106481 ||| |||| | || || | ||| | || | | || |||||| || | Sbjct 17238 CAACAGTG--ATCCTTGTCGGACTCAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTAC 17295 Query 106482 AAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCT 106541 | ||| | |||||| | | |||||| | || || ||||| || ||| || Sbjct 17296 ACACACCGACCTCATCTGGAGAAGAGTACTCGACAACCTCACAGCACAAATTCGAAGACT 17355 Query 106542 TAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGT 106601 | || || ||||| |||||||| ||||||||| ||||||| ||||||||||| | |||| Sbjct 17356 TGATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGA 17415 Query 106602 AGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGT 106660 | ||||| || || || ||||| | || | ||| | |||| || || | | || Sbjct 17416 AAGGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACAACTTCTGAGCCT--- 17472 Query 106661 ACAATGG--CGT-TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 106717 || || | | | | ||||||||| |||||| ||||| | ||||||||| Sbjct 17473 -TAACGGTTCTTCTTCCACGTCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAACTCG 17531 Query 106718 TCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 ||||| | || || |||||||| |||| ||| | || | || |||| | || Sbjct 17532 TCACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCA 17591 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-T 106836 | ||||| ||||||||||| || || || ||||| || | || || | ||| | | Sbjct 17592 TTTTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGT 17651 Query 106837 ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 ||| || ||| || | ||| || || | | || | ||| || | |||||| || Sbjct 17652 GCACGGA-TCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGC 17710 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTA 106952 ||||| || || | |||| || || | || || | | ||| |||| | | Sbjct 17711 ATGCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTG-TTACCACCTTGGTCAA 17769 Query 106953 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 107012 |||| | || || ||| || || |||| ||| ||||||||||||| ||| ||| | Sbjct 17770 CATACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCGT 17829 Query 107013 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 107072 | || || ||| || | | | | | ||| || || | |||||||| | Sbjct 17830 TGGTACCAGCAATGTATGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCAC 17889 Query 107073 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 107132 ||||| ||| || || ||||||| | | ||| | |||||||| | || |||| Sbjct 17890 CAGCCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGT 17949 Query 107133 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 107192 | ||||| | || | | ||||||| |||||||| || | ||| ||||| ||||| | Sbjct 17950 CATCCTTCATTGCAACTAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAA 18009 Query 107193 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 107251 | | ||||| | ||||| |||| || || | |||||| || || | |||||| Sbjct 18010 ACAATGTTGGAGAGGCGTGTGTGAA-GTATCTCTTCGACATCAAATCATACGACTCCAAA 18068 Query 107252 ACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAA 107297 || | ||| || || ||||| || || | ||| || | ||||| Sbjct 18069 ACTTTAGGAATATCATCACCGTGAATTCCAACGGCAACTCTCATAA 18114 >seq290 Length=58723 Score = 84.2 bits (92), Expect = 3e-11 Identities = 278/422 (66%), Gaps = 18/422 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| ||||||||||||||| ||||| ||| | | | |||||| |||||| Sbjct 52803 TAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTCTCCATA 52862 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-TGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 ||||| |||||||| | || || ||| | | || ||||| | || | | Sbjct 52863 AAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATA-AGCAATCT 52921 Query 117105 ATCCGACACATACT-CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 || | |||| | | ||| || | || |||| | || |||||||||| | | | | Sbjct 52922 GTCGG-CACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAAGAAA 52980 Query 117164 ATGGGAGTGCGTC---CAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 |||||| || || | ||| || ||| |||||| | || ||||| ||| || Sbjct 52981 CTGGGAGAGCATCACTCCAGA--AAGTCTT-CTCAATATTGACAGCCTCGGTCATAATTT 53037 Query 117221 CGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA-AGAGCTCCACG---GCA 117276 | ||| | | || | ||| || |||| ||| ||| | | | || Sbjct 53038 TCTTAATAATAACCTTACTAGGTGGATGCTTCAAA----TGAGAGAACAAGAGGCATGCG 53093 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || || ||||||||||| | | ||||||| ||||| |||||| || || ||| Sbjct 53094 AAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGC 53153 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 || | ||| | |||||||||||| | |||| | || || || |||||||| | |||| Sbjct 53154 ATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCC 53213 Query 117397 TC 117398 || Sbjct 53214 TC 53215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973587484720