Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq290 237 2e-57 seq14 178 1e-39 >seq290 Length=58723 Score = 237 bits (262), Expect = 2e-57 Identities = 610/915 (67%), Gaps = 17/915 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || || || || | |||||| || |||||||| ||||| || || | || || || Sbjct 52797 TTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTC 52856 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || |||||||| | |||| || | ||| | |||| || | | || Sbjct 52857 TCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAAGC 52916 Query 18790 AGTCTATCCGCTACA-AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||| || || ||| |||| || ||| | ||||||||| | ||||| || | || Sbjct 52917 AATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAA 52975 Query 18849 TTTAACAGGTAGTGCATCTGTA-AGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 ||| || || ||||| | ||||| |||| | | ||||| || ||||| | |||| Sbjct 52976 AGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAA 53034 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | || || | | | |||| || | | ||| |||| | ||||| | Sbjct 53035 TTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGA 53094 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||| |||||| ||||| || || | || | ||||| || || || | ||||||| Sbjct 53095 AATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCA 53154 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| || || |||||||| ||||| ||||| || ||||| ||||| | ||| | Sbjct 53155 TCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCT 53214 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | | || ||||| || || | ||| || |||| |||||||| ||| | |||||| Sbjct 53215 CGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATC 53274 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 ||| ||||| |||||| | || | | ||| || || | |||| ||| || | | Sbjct 53275 TCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATGGATAGCATTGAACAAGT 53334 Query 19208 A--CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || | | ||| | || | | || | || | || | ||| | || || Sbjct 53335 AGTCGGACTC-CTTCT-TGTCGGTGATGTACGTTTCAAGTAAAAGGGAGTAGGTCTCAGA 53392 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 || || || || | ||||| || |||||||| ||||||||||| || || || Sbjct 53393 GTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGAAC 53452 Query 19326 TTCACTACA--AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 | || || |||| || | |||| || || | ||| || |||||| ||| |||||| Sbjct 53453 CTG-CTTCATGAAATTTTGTG-CCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAAAA 53510 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA----TTCCAATC 19439 ||||| || ||| | ||||| | | | || | || || || | ||||| || Sbjct 53511 AATGCCAAAACACGCGATATAAAGTATCTCTCGT-TGGCATTCATCTTGTTGTTCCAGTC 53569 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 | | | || ||||| | ||| | || ||| | ||||||||||| ||||| || || || Sbjct 53570 AGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTT 53629 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 |||||| | |||||||||| || || ||||| || || |||||||| | | | || || Sbjct 53630 ATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAATCTGTGTATGTTCTC 53689 Query 19560 TTTAAGAATAGGTTC 19574 ||||| | ||| || Sbjct 53690 CTTAAGCAAAGGCTC 53704 >seq14 Length=27313 Score = 178 bits (196), Expect = 1e-39 Identities = 593/919 (65%), Gaps = 10/919 (1%) Strand=Plus/Plus Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954 ||||| ||| | ||||||| |||| || || | | | ||| || | ||| | Sbjct 17292 TTACACACACCGACCTCATCTGGAGAAGAGTACTCGACAACCTCACAGCACAAATTCGAA 17351 Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 | ||||| || ||||| || | |||||| | |||| || || |||||||||| | Sbjct 17352 GACTTGATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATC 17411 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || ||||| || || |||||| |||||| || | || | ||| | || |||| Sbjct 17412 ATGAAAGGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACAACTTCTGAGCC 17471 Query 48075 TTTATAACAGCTCTAGCTTTATTA---TCATGTTCGTATTTAGTATATAACTTCTCAAAT 48131 || ||| | ||| | | || | ||||| ||| || ||||| ||||| Sbjct 17472 TT---AACGGTTCTTCTTCCACGTCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAAC 17528 Query 48132 TCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191 || || ||||| |||| | || || ||| |||| | | ||| | ||| Sbjct 17529 TCGTCACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTA 17588 Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCC 48251 |||| | || || | |||| |||| ||| || |||||||||||| || ||||| Sbjct 17589 TCATTTTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCA 17648 Query 48252 CTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCA 48311 | | | | || || || || |||| | | | || | ||||| | ||||| Sbjct 17649 CGTGCACGGATCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCT 17708 Query 48312 GCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCT 48371 |||||||| |||||||| || || || || ||||||||| || ||||| ||||| || Sbjct 17709 GCATGCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCA 17768 Query 48372 ATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCA 48431 | ||| || |||||| |||| | || | | ||| || | ||||||||| ||| |||| Sbjct 17769 ACATACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCG 17828 Query 48432 TTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCA 48491 ||||| || | ||| || || ||| | || ||| ||| | ||| |||||| Sbjct 17829 TTGGTACCAGCAATGTATGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCA 17888 Query 48492 CCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTA 48551 || ||| | || || || | |||||| |||| | || || || || ||||| ||| Sbjct 17889 CCAGCCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAG 17948 Query 48552 TCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTA 48611 ||||| |||| | || || ||| ||||| || || | ||| || | |||| Sbjct 17949 TCATCCTTCATTGCAACTAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTA 18008 Query 48612 AATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATA 48671 || ||||||||||| || || | || || ||| || | ||| | ||| | || | | Sbjct 18009 AACAATGTTGGAGAGGCGTGTGTGAAGTATCTCTTCGACATCAAATCATACGACTCCAAA 18068 Query 48672 ACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 || | ||||| || | || || || | | || | ||| | | || ||||| Sbjct 18069 ACTTTAGGAATATCATCACCG-TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGG 18127 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 || || ||| || |||||| |||| |||||||| || | || ||||| || Sbjct 18128 CCTCTCTGCAACCTTACCATTTATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCC 18187 Query 48791 AAAATAGTTGTA--TGAAA 48807 ||| ||||| || ||||| Sbjct 18188 AAAGTAGTTATAGCTGAAA 18206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562101928219920