Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq290 237 2e-57
seq14 178 1e-39
>seq290
Length=58723
Score = 237 bits (262), Expect = 2e-57
Identities = 610/915 (67%), Gaps = 17/915 (2%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|| || || || | |||||| || |||||||| ||||| || || | || || ||
Sbjct 52797 TTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTC 52856
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| || |||||||| | |||| || | ||| | |||| || | | ||
Sbjct 52857 TCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAAGC 52916
Query 18790 AGTCTATCCGCTACA-AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
| ||| || || ||| |||| || ||| | ||||||||| | ||||| || | ||
Sbjct 52917 AATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAA 52975
Query 18849 TTTAACAGGTAGTGCATCTGTA-AGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907
||| || || ||||| | ||||| |||| | | ||||| || ||||| | ||||
Sbjct 52976 AGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAA 53034
Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967
| || || | | | |||| || | | ||| |||| | ||||| |
Sbjct 53035 TTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGA 53094
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
||||| |||||| ||||| || || | || | ||||| || || || | |||||||
Sbjct 53095 AATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCA 53154
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
||| ||||| || || |||||||| ||||| ||||| || ||||| ||||| | ||| |
Sbjct 53155 TCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCT 53214
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147
| | || ||||| || || | ||| || |||| |||||||| ||| | ||||||
Sbjct 53215 CGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATC 53274
Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207
||| ||||| |||||| | || | | ||| || || | |||| ||| || | |
Sbjct 53275 TCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATGGATAGCATTGAACAAGT 53334
Query 19208 A--CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265
| | || | | ||| | || | | || | || | || | ||| | || ||
Sbjct 53335 AGTCGGACTC-CTTCT-TGTCGGTGATGTACGTTTCAAGTAAAAGGGAGTAGGTCTCAGA 53392
Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325
|| || || || | ||||| || |||||||| ||||||||||| || || ||
Sbjct 53393 GTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGAAC 53452
Query 19326 TTCACTACA--AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383
| || || |||| || | |||| || || | ||| || |||||| ||| ||||||
Sbjct 53453 CTG-CTTCATGAAATTTTGTG-CCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAAAA 53510
Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA----TTCCAATC 19439
||||| || ||| | ||||| | | | || | || || || | ||||| ||
Sbjct 53511 AATGCCAAAACACGCGATATAAAGTATCTCTCGT-TGGCATTCATCTTGTTGTTCCAGTC 53569
Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499
| | | || ||||| | ||| | || ||| | ||||||||||| ||||| || || ||
Sbjct 53570 AGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTT 53629
Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559
|||||| | |||||||||| || || ||||| || || |||||||| | | | || ||
Sbjct 53630 ATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAATCTGTGTATGTTCTC 53689
Query 19560 TTTAAGAATAGGTTC 19574
||||| | ||| ||
Sbjct 53690 CTTAAGCAAAGGCTC 53704
>seq14
Length=27313
Score = 178 bits (196), Expect = 1e-39
Identities = 593/919 (65%), Gaps = 10/919 (1%)
Strand=Plus/Plus
Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954
||||| ||| | ||||||| |||| || || | | | ||| || | ||| |
Sbjct 17292 TTACACACACCGACCTCATCTGGAGAAGAGTACTCGACAACCTCACAGCACAAATTCGAA 17351
Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014
| ||||| || ||||| || | |||||| | |||| || || |||||||||| |
Sbjct 17352 GACTTGATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATC 17411
Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074
|| ||||| || || |||||| |||||| || | || | ||| | || ||||
Sbjct 17412 ATGAAAGGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACAACTTCTGAGCC 17471
Query 48075 TTTATAACAGCTCTAGCTTTATTA---TCATGTTCGTATTTAGTATATAACTTCTCAAAT 48131
|| ||| | ||| | | || | ||||| ||| || ||||| |||||
Sbjct 17472 TT---AACGGTTCTTCTTCCACGTCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAAC 17528
Query 48132 TCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191
|| || ||||| |||| | || || ||| |||| | | ||| | |||
Sbjct 17529 TCGTCACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTA 17588
Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCC 48251
|||| | || || | |||| |||| ||| || |||||||||||| || |||||
Sbjct 17589 TCATTTTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCA 17648
Query 48252 CTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCA 48311
| | | | || || || || |||| | | | || | ||||| | |||||
Sbjct 17649 CGTGCACGGATCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCT 17708
Query 48312 GCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCT 48371
|||||||| |||||||| || || || || ||||||||| || ||||| ||||| ||
Sbjct 17709 GCATGCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCA 17768
Query 48372 ATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCA 48431
| ||| || |||||| |||| | || | | ||| || | ||||||||| ||| ||||
Sbjct 17769 ACATACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCG 17828
Query 48432 TTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCA 48491
||||| || | ||| || || ||| | || ||| ||| | ||| ||||||
Sbjct 17829 TTGGTACCAGCAATGTATGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCA 17888
Query 48492 CCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTA 48551
|| ||| | || || || | |||||| |||| | || || || || ||||| |||
Sbjct 17889 CCAGCCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAG 17948
Query 48552 TCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTA 48611
||||| |||| | || || ||| ||||| || || | ||| || | ||||
Sbjct 17949 TCATCCTTCATTGCAACTAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTA 18008
Query 48612 AATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATA 48671
|| ||||||||||| || || | || || ||| || | ||| | ||| | || | |
Sbjct 18009 AACAATGTTGGAGAGGCGTGTGTGAAGTATCTCTTCGACATCAAATCATACGACTCCAAA 18068
Query 48672 ACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730
|| | ||||| || | || || || | | || | ||| | | || |||||
Sbjct 18069 ACTTTAGGAATATCATCACCG-TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGG 18127
Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790
|| || ||| || |||||| |||| |||||||| || | || ||||| ||
Sbjct 18128 CCTCTCTGCAACCTTACCATTTATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCC 18187
Query 48791 AAAATAGTTGTA--TGAAA 48807
||| ||||| || |||||
Sbjct 18188 AAAGTAGTTATAGCTGAAA 18206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562101928219920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |