Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq66 188 6e-42
seq59 149 5e-30
seq2 116 3e-20
seq675 104 2e-16
seq423 91.5 1e-12
seq208 89.7 4e-12
>seq66
Length=19490
Score = 188 bits (208), Expect = 6e-42
Identities = 461/692 (67%), Gaps = 20/692 (3%)
Strand=Plus/Plus
Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967
||||||| || ||||| |||||||| || | | || || | ||||| | |||
Sbjct 4558 TAAGAACCGCATGCGAGAGAGCCAAGAGAACATTATCTTCCTCAGCACAAACATCCGTTG 4617
Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027
| | || || || | ||||| ||||| | | || | ||| |||| || | |||||
Sbjct 4618 AGATTGACTCTTTGTACGAGGGTATTGACTTCTACACATCAATTACGAGAGCAAGATTTG 4677
Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087
| || |||| || ||||| || ||| || | || || || ||| ||||||| ||||
Sbjct 4678 AGGAACTTTGCTCAGATCTGTTCAGATCCACTCTGGACCCCGTCGAAAAAGTTTTGAGAG 4737
Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147
|||||||| |||| || | || || |||| ||||||||||| ||||| || |||||||
Sbjct 4738 ATTCAAAGCTTGACAAGGCTCAAATAGATGAGATTGTGCTTGTCGGTGGTTCCACAAGAA 4797
Query 552148 TTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAAA 552204
|||| || || | | | ||| ||| ||| ||||| || || | ||| ||
Sbjct 4798 TTCCAAAGAT---CCAGAAGTTGGTTTCCGATTACTTCAACGGCAAGGAGCCAAA--CAA 4852
Query 552205 GT--GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262
|| | || || |||||||||||||| || ||||| ||| |||| || || ||| | |
Sbjct 4853 GTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCAGTTCAGGCTGCCATTTTGAC 4912
Query 552263 TGGACA-AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321
||| | | | | ||| ||| || | | | ||| | |||||||| || ||||
Sbjct 4913 TGGTGATGAATCGTCAAAGACT-CAGGACTTGTTGCTTTTGGATGTTACACCATTATCGT 4971
Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381
| ||| | || || | || ||| | ||||| || | || ||||| |||| ||||
Sbjct 4972 TGGGTATTGAGACCGCCGGTGGTGTGATGACAAAGTTGATTCCAAGAAACTCTACAATTC 5031
Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441
|||| || || || | || || || ||| | ||||| || | | |||| ||||
Sbjct 5032 CTTGCAAGAAGTCGGAGATCTTCTCCACCTATGCTGATAACCAGCCAGGTGTTTTGATTC 5091
Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT----GGTACTTTT 552497
| | | || || || |||| || || || || |||||| |||| |||
Sbjct 5092 AGGTGTACGAGGGTGAGAGAACCAGAACCAAGGACAA----CAACTTGTTAGGTAAGTTT 5147
Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557
| || || ||||| ||||| || | || || || || ||||| ||||| || |||
Sbjct 5148 GAGTTGACTGGAATTCCACCTGCACCAAGAGGTGTTCCCCAGATTGAGGTTACCTTTGAT 5207
Query 552558 ATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
||||| || || || || |||||||| ||||
Sbjct 5208 ATCGACGCAAACGGTATCTTGAATGTTTCTGC 5239
Score = 170 bits (188), Expect = 2e-36
Identities = 372/550 (68%), Gaps = 28/550 (5%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTG-TTTGGCAAAATGGTAA 550050
||||| || || ||||| || || || || ||||||||| ||| ||||| || |
Sbjct 3783 GCTATTGGAATTGATTTGGGTACTACGTACTCATGTGTTGGTCATTTTGCAAA-TGACAG 3841
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|||||| || ||||| ||||| || |||||| | || ||||| ||||| || |||||||
Sbjct 3842 AGTTGATATCATTGCTAATGACCAGGGTAACCGTACCACTCCTTCTTACGTGGCTTTCAC 3901
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170
|| || || ||| ||||||| || || || | || ||| | |||||||||||
Sbjct 3902 AGACACCGAGAGATTAATTGGTGAGGCTGCCAAGAACCAGGCCGCCATGAATCCTACCAA 3961
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
||| | |||||||| || | | || || || | |||| ||| | || |||
Sbjct 3962 CACTGTCTTTGATGCAAAGAGACTTATAGGTAGGAAGTTTACTGACCAGGAGGTGCAGAA 4021
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCT---GGAAAACCTTATATTGA 550287
||||||||||| ||||| ||| | |||| || |||| ||||| || | ||| |
Sbjct 4022 TGATATGAAGCACTGGCCGTTC---AAGGTTATTGATTCTGAGGGAAAGCCAAAGATTCA 4078
Query 550288 AG----CTACTCATGAAGGATCTGTTAAACAA-----TTTTCACCAGAACAAATTTCATC 550338
| ||| |||| || | || | || |||||||| ||||||| ||
Sbjct 4079 GGTGGAGTAC-----AAGG----GTGAGACGAAGGTGTTCACACCAGAAGAAATTTCTTC 4129
Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGG 550397
|||||||| | || |||| | |||||| |||| | |||| |||| || | ||
Sbjct 4130 CATGGTTTTGACTAAGATGAGAACTACAGCCGAGGCTTAT-TTGGGAGAGAAGGTGAAGG 4188
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || || || ||||| || || || || | || || ||||||||||
Sbjct 4189 ATGCCGTGGTTACCGTTCCTGCTTATTTCAACGATTCGCAGAGACAGGCAACTAAAGATG 4248
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| ||||| || | || || | | ||||| || || ||||| ||||| ||
Sbjct 4249 CTGGTACCATTGCCGGTTTGAACGTGATGAGAATTATTAACGAGCCTACCGCTGCAGCTA 4308
Query 550518 TTGCATATGG 550527
|||| |||||
Sbjct 4309 TTGCTTATGG 4318
>seq59
Length=19937
Score = 149 bits (164), Expect = 5e-30
Identities = 373/555 (67%), Gaps = 20/555 (4%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTG--TTTGGCAAAATGGTA 550049
|| || || || |||||||| || || || ||||||||| |||| ||| | |
Sbjct 5755 GCAATCGGAATTGATTTAGGTACTACCTACTCCTGTGTTGGTCACTTTGCCAAC--GACA 5698
Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109
|||||| ||||||||||| ||||| ||||||||||| || ||||| |||||| | ||||
Sbjct 5697 GAGTTGACATTATTGCCAACGATCAGGGTAACAGAACCACCCCATCCTATGTTGCCTTCA 5638
Query 550110 CGGAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168
| || ||||| | ||| | | ||||| || || || |||| || | || ||||||
Sbjct 5637 CAGACACTGAGAGATTGA-TCGGTGAGGCTGCCAAGAATCAGGCTGCCATGAACCCTACC 5579
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
|| || |||| || ||||| | | || || |||| |||| ||| | || |||
Sbjct 5578 AACACAGTTTTCGACGCTAAGAGACTTATCGGTAGAAAGTTTAGCGATCCAGAGGTCCAG 5519
Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288
||||||||||| ||||| ||| | ||| | | |||||| || | || |
Sbjct 5518 AGTGATATGAAGCACTGGCCATTCAAGATTATCGACTCAGATGGAAAGCCAAAGATCCAG 5459
Query 550289 G-CTACTCATGAAGGATCTGTTAAACAA---TTTT--CACCAGAACAAATTTCATCTATG 550342
| | ||| |||| || | |||| || | ||||||| | ||||||| |||
Sbjct 5458 GTCGACT--ACAAGG----GTGAGACAAAGGTTCTCACACCAGAGGAGGTTTCATCCATG 5405
Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGC 550401
||| | | || |||| | | || ||| || ||| |||| || || |||| ||||||
Sbjct 5404 GTTCTCAGCAAGATGAGAGAGACCGCCGAGGCCTTT-TTGGGCAGCAAGGTTAAGGATGC 5346
Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461
|| | || | ||||| || || || ||||| || | || || || || ||||||||
Sbjct 5345 CGTTGTTACCATCCCAGCCTACTTCAACGACTCGCAGAGACAGGCAACCAAGGATGCTGG 5286
Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521
||||| || | || || | | || ||||| || || ||||| || || ||||
Sbjct 5285 TACCATTGCCGGTATGAACGTGATGAGAATCATCAACGAGCCAACTGCCGCAGCCATTGC 5226
Query 550522 ATATGGACTTGATAA 550536
|| || | |||||
Sbjct 5225 TTACGGTTTGGATAA 5211
Score = 145 bits (160), Expect = 6e-29
Identities = 449/686 (65%), Gaps = 24/686 (3%)
Strand=Plus/Minus
Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969
|||||||| || || |||||||| || | | || || | | || || | || ||
Sbjct 4981 AGAACTGCCTGTGAGAGAGCCAAGAGAACCTTGTCTTCCTCTGCACAGACTTCGATCGAG 4922
Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029
| || || || || || || || || | | || | || ||||||| | ||| ||
Sbjct 4921 ATCGACTCCTTGTTCGAAGGTATCGACTTCTACACCTCGATCACGAGGGCTAGATTCGAG 4862
Query 552030 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGAT 552089
|| || || |||||||| || ||| || | | ||| || || | || || ||
Sbjct 4861 GAGATGTGCTCTGATCTGTTCAGATCCACCTTGGCACCTGTCGAGAAGGTGTTGCAGGAC 4802
Query 552090 TCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATT 552149
|||||| | || || || | | |||| || || ||||| ||||| || |||||||||
Sbjct 4801 TCAAAGTTGGACAAGTCACAGATCGATGAGATCGTTCTTGTCGGTGGTTCCACAAGAATT 4742
Query 552150 CCTAAAATTCGCGAAATGTTAAGTTCT-----TATTTCAATGGTAAAAAATTAAATGAAA 552204
|| ||| || ||| ||| | ||| | |||| || ||| | ||| ||
Sbjct 4741 CC-AAAGGTCCAGAA--GTT--GGTCTCCGACTTCTTCAGCGGAAAAGAGCCAAAC--AA 4689
Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262
|| | || || || ||||||||||| || |||||||| |||| || || || |||||
Sbjct 4688 GTCCATCAACCCTGACGAGGCTGTTGCTTACGGTGCCGCCGTTCAGGCCGCCATCCTTTC 4629
Query 552263 TGGACAA-ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321
|| | | | || || || |||| | | | ||| | ||||| || || | || |
Sbjct 4628 CGGTGATGAATCATCCAAGAC-ACAAGACTTGTTGCTTTTGGATGTCACCCCATTGTCCC 4570
Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381
| ||| | || || | || ||| | ||||| || | ||| ||||| | || ||||
Sbjct 4569 TAGGTATCGAGACTGCCGGTGGTGTCATGACCAAGTTGATCCCAAGAAACTCGACCATTC 4510
Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441
|||| || || ||| | || ||||| || || || || ||| ||| ||| || |
Sbjct 4509 CTTGCAAGAAGTCTGAGATCTTCTCTACTTACTCTGACAACCAACCTGGTGTGTTGATCC 4450
Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG----GTACTTTT 552497
| ||| ||||| || |||| || || || || ||||||| ||| ||
Sbjct 4449 AGGTTTACGAAGGTGAGAGAACTAGAACCAAGGACAA----CAACTTGTTGGGTAAGTTC 4394
Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557
| || || || || || ||||| | || || || || || || ||||||||||||
Sbjct 4393 GAGTTGACTGGAATCCCACCAGCTCCAAGGGGTGTTCCTCAGATCGAGGTTACTTTCGAT 4334
Query 552558 ATCGATGCCAATGGAATTTTGAATGT 552583
||||||||||| ||||||||||||||
Sbjct 4333 ATCGATGCCAACGGAATTTTGAATGT 4308
>seq2
Length=106890
Score = 116 bits (128), Expect = 3e-20
Identities = 178/251 (71%), Gaps = 2/251 (1%)
Strand=Plus/Minus
Query 368610 TTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGG 368669
|||||| || || |||||| ||||| ||||| ||| | |||||||| ||| | ||
Sbjct 104201 TTGGGGTACGCCTATTCCATTATGGGTGTCTGACGATTTCAAGGAAATTGTCTGTGTTGG 104142
Query 368670 TTCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGA 368729
|| ||| || | | || ||||| || ||| |||| ||| ||| | || | ||
Sbjct 104141 ATCCATTGGCGAGCTTGAGGAGTTATCCGGCGTGAAAAACATTTCGGATATTCACAGAGA 104082
Query 368730 TAAAATTGATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGA 368789
|| |||||| |||||| || ||||||||| | || || || ||| || ||||
Sbjct 104081 CAAGATTGATAACATTACCATCCCATCAAAGCAGGGCAAGGGACAGTTGCACAGAATTGA 104022
Query 368790 AGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGG-TCAAATACATTATC 368848
|| || || || || ||||| ||||||||||||||||| |||| || || || ||||
Sbjct 104021 AGAGGTGTTTGACTGTTGGTTCGAATCAGGTTCTATGCCATATGCCTCGAAG-CACTATC 103963
Query 368849 CATTTGATAAC 368859
||||||| |||
Sbjct 103962 CATTTGAAAAC 103952
>seq675
Length=37359
Score = 104 bits (114), Expect = 2e-16
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
|| || || ||||| || || || ||| ||||| ||||| | | || | ||||
Sbjct 23482 ATTGGAATTGATTTGGGTACGACTTATTCGTGTGTGGGTGTGATGAAGTCAGGAAGAGTT 23423
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
|||||| ||||||| |||||||||||||||| || || || ||||| | || | |||
Sbjct 23422 GAAATTCTTGCCAACGATCAAGGTAACAGAATCACCCCTTCGTATGTCGCATTTTCTGAA 23363
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174
|||| | |||||||| || || || |||| || || ||| | | ||| |||
Sbjct 23362 GGTGAAAGACTTGTTGGTGAGGCTGCGAAGAATCAGGCTGCTTCTAACACAAACAACACT 23303
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216
||| ||| ||| ||||| || |||||||| |||| ||||
Sbjct 23302 GTTTACGATATTAAGCGTTTGATGGGAAGAAGATTTACTGAT 23261
>seq423
Length=50725
Score = 91.5 bits (100), Expect = 1e-12
Identities = 132/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
||| ||||| |||| | |||||| || || | || || || ||||| || | |||
Sbjct 3641 AATGTTGTAGTCAGACAAAGTTCTGCCGTCCTCCAACTGCTTACCAGCAAAGATCAATCT 3700
Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411
||||||||||| |||||||| || || ||||| || |||||||| || ||||| ||
Sbjct 3701 CTGCTGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTTTTGTTTGACATTGTCAATAGT 3760
Query 563412 ATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470
|| | || | | || || || | || ||||| || | ||| |||||||||||||
Sbjct 3761 GTC-GGAAGACTCAACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACGAAAATTT 3819
Query 563471 GCAT 563474
||||
Sbjct 3820 GCAT 3823
>seq208
Length=10633
Score = 89.7 bits (98), Expect = 4e-12
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345
||||| || ||||| |||| | |||||| ||| || | || || |||||||| ||
Sbjct 9492 TTTGG--ATGTTGTAGTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGAT 9549
Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405
| ||| ||||||||||| || ||||| || ||||| || || ||||| || || ||
Sbjct 9550 CAATCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTC 9609
Query 563406 AATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464
||| || || | || | || || | || | ||| ||||| || | || |||||||
Sbjct 9610 AATGGTGTCTG-AAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGA 9668
Query 563465 AAATTTGCAT 563474
||||||||||
Sbjct 9669 AAATTTGCAT 9678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029244278949220
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