Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq66 188 6e-42 seq59 149 5e-30 seq2 116 3e-20 seq675 104 2e-16 seq423 91.5 1e-12 seq208 89.7 4e-12 >seq66 Length=19490 Score = 188 bits (208), Expect = 6e-42 Identities = 461/692 (67%), Gaps = 20/692 (3%) Strand=Plus/Plus Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 ||||||| || ||||| |||||||| || | | || || | ||||| | ||| Sbjct 4558 TAAGAACCGCATGCGAGAGAGCCAAGAGAACATTATCTTCCTCAGCACAAACATCCGTTG 4617 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 | | || || || | ||||| ||||| | | || | ||| |||| || | ||||| Sbjct 4618 AGATTGACTCTTTGTACGAGGGTATTGACTTCTACACATCAATTACGAGAGCAAGATTTG 4677 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 | || |||| || ||||| || ||| || | || || || ||| ||||||| |||| Sbjct 4678 AGGAACTTTGCTCAGATCTGTTCAGATCCACTCTGGACCCCGTCGAAAAAGTTTTGAGAG 4737 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 |||||||| |||| || | || || |||| ||||||||||| ||||| || ||||||| Sbjct 4738 ATTCAAAGCTTGACAAGGCTCAAATAGATGAGATTGTGCTTGTCGGTGGTTCCACAAGAA 4797 Query 552148 TTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAAA 552204 |||| || || | | | ||| ||| ||| ||||| || || | ||| || Sbjct 4798 TTCCAAAGAT---CCAGAAGTTGGTTTCCGATTACTTCAACGGCAAGGAGCCAAA--CAA 4852 Query 552205 GT--GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | || || |||||||||||||| || ||||| ||| |||| || || ||| | | Sbjct 4853 GTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCAGTTCAGGCTGCCATTTTGAC 4912 Query 552263 TGGACA-AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 ||| | | | | ||| ||| || | | | ||| | |||||||| || |||| Sbjct 4913 TGGTGATGAATCGTCAAAGACT-CAGGACTTGTTGCTTTTGGATGTTACACCATTATCGT 4971 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | ||| | || || | || ||| | ||||| || | || ||||| |||| |||| Sbjct 4972 TGGGTATTGAGACCGCCGGTGGTGTGATGACAAAGTTGATTCCAAGAAACTCTACAATTC 5031 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 |||| || || || | || || || ||| | ||||| || | | |||| |||| Sbjct 5032 CTTGCAAGAAGTCGGAGATCTTCTCCACCTATGCTGATAACCAGCCAGGTGTTTTGATTC 5091 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT----GGTACTTTT 552497 | | | || || || |||| || || || || |||||| |||| ||| Sbjct 5092 AGGTGTACGAGGGTGAGAGAACCAGAACCAAGGACAA----CAACTTGTTAGGTAAGTTT 5147 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 | || || ||||| ||||| || | || || || || ||||| ||||| || ||| Sbjct 5148 GAGTTGACTGGAATTCCACCTGCACCAAGAGGTGTTCCCCAGATTGAGGTTACCTTTGAT 5207 Query 552558 ATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||| || || || || |||||||| |||| Sbjct 5208 ATCGACGCAAACGGTATCTTGAATGTTTCTGC 5239 Score = 170 bits (188), Expect = 2e-36 Identities = 372/550 (68%), Gaps = 28/550 (5%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTG-TTTGGCAAAATGGTAA 550050 ||||| || || ||||| || || || || ||||||||| ||| ||||| || | Sbjct 3783 GCTATTGGAATTGATTTGGGTACTACGTACTCATGTGTTGGTCATTTTGCAAA-TGACAG 3841 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||| || ||||| ||||| || |||||| | || ||||| ||||| || ||||||| Sbjct 3842 AGTTGATATCATTGCTAATGACCAGGGTAACCGTACCACTCCTTCTTACGTGGCTTTCAC 3901 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || ||| ||||||| || || || | || ||| | ||||||||||| Sbjct 3902 AGACACCGAGAGATTAATTGGTGAGGCTGCCAAGAACCAGGCCGCCATGAATCCTACCAA 3961 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | |||||||| || | | || || || | |||| ||| | || ||| Sbjct 3962 CACTGTCTTTGATGCAAAGAGACTTATAGGTAGGAAGTTTACTGACCAGGAGGTGCAGAA 4021 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCT---GGAAAACCTTATATTGA 550287 ||||||||||| ||||| ||| | |||| || |||| ||||| || | ||| | Sbjct 4022 TGATATGAAGCACTGGCCGTTC---AAGGTTATTGATTCTGAGGGAAAGCCAAAGATTCA 4078 Query 550288 AG----CTACTCATGAAGGATCTGTTAAACAA-----TTTTCACCAGAACAAATTTCATC 550338 | ||| |||| || | || | || |||||||| ||||||| || Sbjct 4079 GGTGGAGTAC-----AAGG----GTGAGACGAAGGTGTTCACACCAGAAGAAATTTCTTC 4129 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGG 550397 |||||||| | || |||| | |||||| |||| | |||| |||| || | || Sbjct 4130 CATGGTTTTGACTAAGATGAGAACTACAGCCGAGGCTTAT-TTGGGAGAGAAGGTGAAGG 4188 Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || || || ||||| || || || || | || || |||||||||| Sbjct 4189 ATGCCGTGGTTACCGTTCCTGCTTATTTCAACGATTCGCAGAGACAGGCAACTAAAGATG 4248 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||||| || | || || | | ||||| || || ||||| ||||| || Sbjct 4249 CTGGTACCATTGCCGGTTTGAACGTGATGAGAATTATTAACGAGCCTACCGCTGCAGCTA 4308 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 4309 TTGCTTATGG 4318 >seq59 Length=19937 Score = 149 bits (164), Expect = 5e-30 Identities = 373/555 (67%), Gaps = 20/555 (4%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTG--TTTGGCAAAATGGTA 550049 || || || || |||||||| || || || ||||||||| |||| ||| | | Sbjct 5755 GCAATCGGAATTGATTTAGGTACTACCTACTCCTGTGTTGGTCACTTTGCCAAC--GACA 5698 Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109 |||||| ||||||||||| ||||| ||||||||||| || ||||| |||||| | |||| Sbjct 5697 GAGTTGACATTATTGCCAACGATCAGGGTAACAGAACCACCCCATCCTATGTTGCCTTCA 5638 Query 550110 CGGAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 | || ||||| | ||| | | ||||| || || || |||| || | || |||||| Sbjct 5637 CAGACACTGAGAGATTGA-TCGGTGAGGCTGCCAAGAATCAGGCTGCCATGAACCCTACC 5579 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || |||| || ||||| | | || || |||| |||| ||| | || ||| Sbjct 5578 AACACAGTTTTCGACGCTAAGAGACTTATCGGTAGAAAGTTTAGCGATCCAGAGGTCCAG 5519 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 ||||||||||| ||||| ||| | ||| | | |||||| || | || | Sbjct 5518 AGTGATATGAAGCACTGGCCATTCAAGATTATCGACTCAGATGGAAAGCCAAAGATCCAG 5459 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAA---TTTT--CACCAGAACAAATTTCATCTATG 550342 | | ||| |||| || | |||| || | ||||||| | ||||||| ||| Sbjct 5458 GTCGACT--ACAAGG----GTGAGACAAAGGTTCTCACACCAGAGGAGGTTTCATCCATG 5405 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGC 550401 ||| | | || |||| | | || ||| || ||| |||| || || |||| |||||| Sbjct 5404 GTTCTCAGCAAGATGAGAGAGACCGCCGAGGCCTTT-TTGGGCAGCAAGGTTAAGGATGC 5346 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || | || | ||||| || || || ||||| || | || || || || |||||||| Sbjct 5345 CGTTGTTACCATCCCAGCCTACTTCAACGACTCGCAGAGACAGGCAACCAAGGATGCTGG 5286 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 ||||| || | || || | | || ||||| || || ||||| || || |||| Sbjct 5285 TACCATTGCCGGTATGAACGTGATGAGAATCATCAACGAGCCAACTGCCGCAGCCATTGC 5226 Query 550522 ATATGGACTTGATAA 550536 || || | ||||| Sbjct 5225 TTACGGTTTGGATAA 5211 Score = 145 bits (160), Expect = 6e-29 Identities = 449/686 (65%), Gaps = 24/686 (3%) Strand=Plus/Minus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 |||||||| || || |||||||| || | | || || | | || || | || || Sbjct 4981 AGAACTGCCTGTGAGAGAGCCAAGAGAACCTTGTCTTCCTCTGCACAGACTTCGATCGAG 4922 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029 | || || || || || || || || | | || | || ||||||| | ||| || Sbjct 4921 ATCGACTCCTTGTTCGAAGGTATCGACTTCTACACCTCGATCACGAGGGCTAGATTCGAG 4862 Query 552030 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGAT 552089 || || || |||||||| || ||| || | | ||| || || | || || || Sbjct 4861 GAGATGTGCTCTGATCTGTTCAGATCCACCTTGGCACCTGTCGAGAAGGTGTTGCAGGAC 4802 Query 552090 TCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATT 552149 |||||| | || || || | | |||| || || ||||| ||||| || ||||||||| Sbjct 4801 TCAAAGTTGGACAAGTCACAGATCGATGAGATCGTTCTTGTCGGTGGTTCCACAAGAATT 4742 Query 552150 CCTAAAATTCGCGAAATGTTAAGTTCT-----TATTTCAATGGTAAAAAATTAAATGAAA 552204 || ||| || ||| ||| | ||| | |||| || ||| | ||| || Sbjct 4741 CC-AAAGGTCCAGAA--GTT--GGTCTCCGACTTCTTCAGCGGAAAAGAGCCAAAC--AA 4689 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | || || || ||||||||||| || |||||||| |||| || || || ||||| Sbjct 4688 GTCCATCAACCCTGACGAGGCTGTTGCTTACGGTGCCGCCGTTCAGGCCGCCATCCTTTC 4629 Query 552263 TGGACAA-ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 || | | | || || || |||| | | | ||| | ||||| || || | || | Sbjct 4628 CGGTGATGAATCATCCAAGAC-ACAAGACTTGTTGCTTTTGGATGTCACCCCATTGTCCC 4570 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | ||| | || || | || ||| | ||||| || | ||| ||||| | || |||| Sbjct 4569 TAGGTATCGAGACTGCCGGTGGTGTCATGACCAAGTTGATCCCAAGAAACTCGACCATTC 4510 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 |||| || || ||| | || ||||| || || || || ||| ||| ||| || | Sbjct 4509 CTTGCAAGAAGTCTGAGATCTTCTCTACTTACTCTGACAACCAACCTGGTGTGTTGATCC 4450 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG----GTACTTTT 552497 | ||| ||||| || |||| || || || || ||||||| ||| || Sbjct 4449 AGGTTTACGAAGGTGAGAGAACTAGAACCAAGGACAA----CAACTTGTTGGGTAAGTTC 4394 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 | || || || || || ||||| | || || || || || || |||||||||||| Sbjct 4393 GAGTTGACTGGAATCCCACCAGCTCCAAGGGGTGTTCCTCAGATCGAGGTTACTTTCGAT 4334 Query 552558 ATCGATGCCAATGGAATTTTGAATGT 552583 ||||||||||| |||||||||||||| Sbjct 4333 ATCGATGCCAACGGAATTTTGAATGT 4308 >seq2 Length=106890 Score = 116 bits (128), Expect = 3e-20 Identities = 178/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 368610 TTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGG 368669 |||||| || || |||||| ||||| ||||| ||| | |||||||| ||| | || Sbjct 104201 TTGGGGTACGCCTATTCCATTATGGGTGTCTGACGATTTCAAGGAAATTGTCTGTGTTGG 104142 Query 368670 TTCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGA 368729 || ||| || | | || ||||| || ||| |||| ||| ||| | || | || Sbjct 104141 ATCCATTGGCGAGCTTGAGGAGTTATCCGGCGTGAAAAACATTTCGGATATTCACAGAGA 104082 Query 368730 TAAAATTGATCACATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGA 368789 || |||||| |||||| || ||||||||| | || || || ||| || |||| Sbjct 104081 CAAGATTGATAACATTACCATCCCATCAAAGCAGGGCAAGGGACAGTTGCACAGAATTGA 104022 Query 368790 AGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGG-TCAAATACATTATC 368848 || || || || || ||||| ||||||||||||||||| |||| || || || |||| Sbjct 104021 AGAGGTGTTTGACTGTTGGTTCGAATCAGGTTCTATGCCATATGCCTCGAAG-CACTATC 103963 Query 368849 CATTTGATAAC 368859 ||||||| ||| Sbjct 103962 CATTTGAAAAC 103952 >seq675 Length=37359 Score = 104 bits (114), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||||| || || || ||| ||||| ||||| | | || | |||| Sbjct 23482 ATTGGAATTGATTTGGGTACGACTTATTCGTGTGTGGGTGTGATGAAGTCAGGAAGAGTT 23423 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||| ||||||| |||||||||||||||| || || || ||||| | || | ||| Sbjct 23422 GAAATTCTTGCCAACGATCAAGGTAACAGAATCACCCCTTCGTATGTCGCATTTTCTGAA 23363 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 |||| | |||||||| || || || |||| || || ||| | | ||| ||| Sbjct 23362 GGTGAAAGACTTGTTGGTGAGGCTGCGAAGAATCAGGCTGCTTCTAACACAAACAACACT 23303 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 ||| ||| ||| ||||| || |||||||| |||| |||| Sbjct 23302 GTTTACGATATTAAGCGTTTGATGGGAAGAAGATTTACTGAT 23261 >seq423 Length=50725 Score = 91.5 bits (100), Expect = 1e-12 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| | |||||| || || | || || || ||||| || | ||| Sbjct 3641 AATGTTGTAGTCAGACAAAGTTCTGCCGTCCTCCAACTGCTTACCAGCAAAGATCAATCT 3700 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||||||||| |||||||| || || ||||| || |||||||| || ||||| || Sbjct 3701 CTGCTGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTTTTGTTTGACATTGTCAATAGT 3760 Query 563412 ATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 || | || | | || || || | || ||||| || | ||| ||||||||||||| Sbjct 3761 GTC-GGAAGACTCAACCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACGAAAATTT 3819 Query 563471 GCAT 563474 |||| Sbjct 3820 GCAT 3823 >seq208 Length=10633 Score = 89.7 bits (98), Expect = 4e-12 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || ||||| |||| | |||||| ||| || | || || |||||||| || Sbjct 9492 TTTGG--ATGTTGTAGTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGAT 9549 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 | ||| ||||||||||| || ||||| || ||||| || || ||||| || || || Sbjct 9550 CAATCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTC 9609 Query 563406 AATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| || || | || | || || | || | ||| ||||| || | || ||||||| Sbjct 9610 AATGGTGTCTG-AAGACTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGA 9668 Query 563465 AAATTTGCAT 563474 |||||||||| Sbjct 9669 AAATTTGCAT 9678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029244278949220