Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq187 174 3e-38 seq14 127 4e-24 seq290 109 1e-18 >seq187 Length=11729 Score = 174 bits (192), Expect = 3e-38 Identities = 246/341 (72%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 |||||||| || || | | ||||| | ||||||| | ||| || ||||||| || Sbjct 2330 AGACTCCACACCTGGTCCTTCTCGACCCGCCGCATGAACAAGTCGGGAATCCACAATGCA 2271 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || ||||| | || |||| ||||||| ||||| ||||||| ||| ||| | || Sbjct 2270 TAGAATAGATCCCGGGCCCGCATCTCCTCCTTGCCGTGGTTTTTCTTCAAATCGAGGAAT 2211 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTCGCTTGT 222185 || | ||||| || ||||||||||||| || ||| || | || ||||| ||||||| Sbjct 2210 TCCATGATGTCTGCATGCCACGGCTCCAAAT--ACGCACAAATCGCACCGGGCCGCTTGT 2153 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGT 222244 | || ||||| |||| ||| || ||| || |||||| | || || |||| || | Sbjct 2152 TTCCGCCCTGGTCCA-CATACTTGGCAGTGCTGTTGAACACCCGGAGCATCGGAACTATG 2094 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 ||| ||||| |||||||||||| |||||||| ||| | |||| | ||||||| Sbjct 2093 CCGCTGGATGTCCCGTTGGTGCCCGAAATGTACGTTCCGGCCGCCCGAACGTTACTGAGG 2034 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCA 222345 ||| ||||| ||||| ||| |||||||||||| || || Sbjct 2033 TGCATTCCGATTCCACCCGCGGCTTTCGAGATCATCGCACA 1993 >seq14 Length=27313 Score = 127 bits (140), Expect = 4e-24 Identities = 512/794 (64%), Gaps = 23/794 (3%) Strand=Plus/Plus Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 |||||||||| |||| || || |||||| ||| | ||| || |||||||| | || Sbjct 17353 ACTTGATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCA 17412 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCG 221899 | || || || || || ||||||| ||| ||||| | ||| | | |||| || Sbjct 17413 TGAAAGGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACAACT-TCTGAGCC 17471 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959 | || || || | | ||||| ||| || || | || || | | | |||||| Sbjct 17472 TTAACGGTTCTTCTTCCACGTCCCTC---CTTCTCGTAACGAGTGTACAACTTTTCAAAC 17528 Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019 | ||||| || | || || ||||| | | ||| | | || | |||| Sbjct 17529 TCGTCACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTA 17588 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 | || | || || | || |||||| || || |||||||| || || | || | ||| Sbjct 17589 TCATTTTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCA 17648 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139 | | || ||||||| |||| || ||||| | ||| | || ||||| || || Sbjct 17649 CGTGCACGGATCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCT 17708 Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199 || ||||| || || | |||| || | || || |||| |||||| ||||| || || Sbjct 17709 GCATGCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCA 17768 Query 222200 ACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCG 222259 || ||| | | |||||| | |||| | || | | || |||||| |||| Sbjct 17769 ACATACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCG 17828 Query 222260 TTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATG----CCGAT 222315 ||||| || |||||| | ||| | | | |||| || | ||| || || Sbjct 17829 TTGGTACCAGCAATGTATGAACCTGTAGAACGAATGTTA-TGA---ATATGTAGACCAAT 17884 Query 222316 ACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCAT 222375 |||||| || || || |||| ||| || || | |||||| ||| || || || Sbjct 17885 ACCACCAGCCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAAT 17944 Query 222376 AGAGTCCTCCTTGACGTTCAGCAGAAAA-CAAGACGACATCTGAGATTTGGTGGA--ACA 222432 |||||| ||||| | | || | | || |||||||||||||| | ||||| || Sbjct 17945 AGAGTCATCCTTCAT-TGCAACTAAGAAGCAAGACGACATCTGTG--GGCGTGGAGTACC 18001 Query 222433 GGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGT 222492 ||| ||||||| || ||| ||||||||| ||||| | | | ||||||| ||| |||| Sbjct 18002 GGCATTAAACAATGTTGGAGAGGCGTGTGTGAAGTATCTCTTCGACATCAAATCATACGA 18061 Query 222493 CTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT--GTACATG 222550 ||| | ||| | | || | || |||||||| | ||| |||||| | | ||| Sbjct 18062 CTCCAAAACTTTAGGAATATCATCACCGTGAATTCCAACGGCAACTCTCATAAGAAGATG 18121 Query 222551 TACTGGGGCCTCTC 222564 ||| |||||||| Sbjct 18122 --CTGAGGCCTCTC 18133 >seq290 Length=58723 Score = 109 bits (120), Expect = 1e-18 Identities = 372/572 (65%), Gaps = 21/572 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||||||| | ||||| |||||||| | ||| ||||| || || ||||||||| Sbjct 53647 GATATATGGCAAATGTATAAGAAGGCGGAGGCCTCTTTTTGGACTGCTGAGGAGATTGAT 53588 Query 25534 CTGGCCAAGGACATGGACGGCTGGTAC-----GCTCTAT-CCAAAGACGAGCAGCATTTT 25587 || | |||||| || | |||| || | | || |||| || ||| | || | Sbjct 53587 CTCTCTAAGGACTTGACTGACTGGAACAACAAGATGAATGCCAACGA-GAGATACTTTAT 53529 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 || || || |||||||| ||||| || ||||||||||| || ||||||| || Sbjct 53528 ATCGCGT--GTTTTGGCATTTTTTGCCGCTTCTGATGGTATTGTTGACGAGAACTTGGCA 53471 Query 25648 GAGAGATTCACCAGGGAAGTGCAGT-ACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGA 25705 | | |||| | | | || || | || | || |||| | || ||||||||||||| Sbjct 53470 CAAAATTTCATGAAGCAGGTTCAATTACCAGAAG--CAAGAGCCTTTTACGGTTTCCAGA 53413 Query 25706 TGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAG 25765 | | || || | ||||||||| || || | || |||||||| || | Sbjct 53412 TTATGGTTGAGAACATCCACTCTGAGACCTACTCCCTTTTACTTGAAACGTACATCACCG 53353 Query 25766 ACGTCGCCGAGAGAGATCGGCTGTTTGGT----GCCATCGAGCACATACCCAGCATCAAG 25821 || || ||| || || ||| | || ||| | ||| || || ||| Sbjct 53352 ACAA----GAAGGAGTCCGACTACTTGTTCAATGCTATCCATACCATTCCACCTATTAAG 53297 Query 25822 AGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881 ||||| | ||||| ||| ||||| |||| | ||| || || ||| | Sbjct 53296 GAAAAGGCTCTATGGGCTTTGAGATGGATAAACAATGATGATGCTTTGTATGCTGAGAGA 53237 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 |||| ||||||||||| | ||||| | || ||| || |||||||| | |||||| Sbjct 53236 TTGGTCGCCTTTGCTGCCATCGAGGGTGTTTTCTTCTCTGGCTCGTTTGCCTCTATCTTC 53177 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||| | ||| ||| || ||||| || || ||| ||||| ||||| || ||||| Sbjct 53176 TGGTTGAAGAAGAGAGGTTTGATGCCTGGACTTACCTTCTCCAATGAGCTTATTTGCAGG 53117 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 || |||||||| || | ||||| || ||||| Sbjct 53116 GATGAGGGTCTACATACTGATTTCGCATGCCT 53085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928833444872320