Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq66 205 6e-47
seq59 134 9e-26
seq423 127 1e-23
seq675 102 5e-16
seq208 91.5 1e-12
>seq66
Length=19490
Score = 205 bits (226), Expect = 6e-47
Identities = 473/702 (67%), Gaps = 12/702 (2%)
Strand=Plus/Plus
Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536
|||||| ||| | | ||||| || || || | || ||| || | | ||||| | |
Sbjct 4544 AGCATTGAGAAGATTAAGAACCGCATGCGAGAGAGCCAAGAGAACATTATCTTCCTCAGC 4603
Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTAC 475596
||||| | ||||| |||| ||| | | || || ||||| | | || |||||
Sbjct 4604 ACAAACATCCGTTGAGATTGACTCTTTGTACGAGGGTATTGACTTCTACACATCAATTAC 4663
Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656
|| || | |||||| || |||| || ||||| || ||| || | || ||||| ||
Sbjct 4664 GAGAGCAAGATTTGAGGAACTTTGCTCAGATCTGTTCAGATCCACTCTGGACCCCGTCGA 4723
Query 475657 ACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGG 475716
| ||||| | |||||||| || |||||||| | ||| | |||| ||||| ||||| ||
Sbjct 4724 AAAAGTTTTGAGAGATTCAAAGCTTGACAAGGCTCAAATAGATGAGATTGTGCTTGTCGG 4783
Query 475717 AGGTTCAACAAGAATTCCAAAAAT-AAGAGAAATGCTTTCATCATATTTTAATGGTAAAA 475775
||||| |||||||||||||| || ||| | || |||| || || || || ||
Sbjct 4784 TGGTTCCACAAGAATTCCAAAGATCCAGA-AGTTGGTTTCCGATTACTTCAACGGCAAGG 4842
Query 475776 AGTTAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833
|| ||| |||| | || |||||||| ||||||||||| || ||||| || || ||
Sbjct 4843 AGCCAAA--CAAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCAGTTCAGGC 4900
Query 475834 AGCTATTTTATCAGGTCAATCAGACG--AGAAACTAAATAATATTGTACTTGTTGACGTA 475891
|| ||||| | ||| || | || | | ||| | | | | | ||| | || ||
Sbjct 4901 TGCCATTTTGACTGGT-GATGAATCGTCAAAGACTCAGGACT-TGTTGCTTTTGGATGTT 4958
Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951
|| ||| | || || ||| |||| || | || || | ||||| || | ||| |||
Sbjct 4959 ACACCATTATCGTTGGGTATTGAGACCGCCGGTGGTGTGATGACAAAGTTGATTCCAAGA 5018
Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011
|| || | || || ||||| || || | | || ||||| ||| ||||||| || ||
Sbjct 5019 AACTCTACAATTCCTTGCAAGAAGTCGGAGATCTTCTCCACCTATGCTGATAACCAGCCA 5078
Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT 476071
||| || || | | || ||||| |||| || || || || ||| |
Sbjct 5079 GGTGTTTTGATTCAGGTGTACGAGGGTGAGAGAACCAGAACCAAGGACAACAACTTGTTA 5138
Query 476072 GGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130
|| | ||| | |||| || ||||| ||||| || ||||| ||||| || ||||| ||
Sbjct 5139 GGTAAGTTTGA-GTTGACTGGAATTCCACCTGCACCAAGAGGTGTTCCCCAGATTGAGGT 5197
Query 476131 TACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172
||| |||||||| || ||||| ||||| | |||||| ||||
Sbjct 5198 TACCTTTGATATCGACGCAAACGGTATCTTGAATGTTTCTGC 5239
Score = 181 bits (200), Expect = 7e-40
Identities = 379/553 (69%), Gaps = 14/553 (3%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387
|| ||||| |||||||| || ||||| ||| ||||| | | ||| ||||| || |
Sbjct 3783 GCTATTGGAATTGATTTGGGTACTACGTACTCATGTGTTGGTCATTTTGCAAA-TGACAG 3841
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| || || ||||| |||||||| ||||| | || || || || || || |||| ||
Sbjct 3842 AGTTGATATCATTGCTAATGACCAGGGTAACCGTACCACTCCTTCTTACGTGGCTTTCAC 3901
Query 474448 TGAAACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506
|| || || | || | ||||| || ||||| || | || || || |||||| |
Sbjct 3902 AGACACCGAGAGAT-TAATTGGTGAGGCTGCCAAGAACCAGGCCGCCATGAATCCTACCA 3960
Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCA 474564
| ||| | |||||||| || ||| | || ||| | || ||| ||| ||| || ||
Sbjct 3961 ACACTGTCTTTGATGCAAAGAGACTTATAGGTAGGAAGTTTACTGA--CCAGGAGGTGCA 4018
Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--A 474622
||||||| || ||||| || ||||| || || || || || ||| | || |
Sbjct 4019 GAATGATATGAAGCACTGGCCGTTCAAGGTTATTGATTCTGAGGGAAAGCCAAAGATTCA 4078
Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682
| | | |||| | ||||| || || || |||| ||| |||||||||| ||||||
Sbjct 4079 GGTGGAGTACAAG--GGTGAGACGAAGGTGTTCACACCAGAAGAAATTTCTTCCATGGTT 4136
Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741
|| | || |||| | || || ||| | ||| | ||| | | || | ||||| ||
Sbjct 4137 TTGACTAAGATGAGAACTACAGCCGAGG-CTTATTTGGGAGAGAAGGTGAAGGATGCCGT 4195
Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801
|||| ||||| || ||||| || ||||| || | || |||||||||||||| || |
Sbjct 4196 GGTTACCGTTCCTGCTTATTTCAACGATTCGCAGAGACAGGCAACTAAAGATGCTGGTAC 4255
Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861
||||| ||| | || || | | |||||||| || || || || || || |||||||
Sbjct 4256 CATTGCCGGTTTGAACGTGATGAGAATTATTAACGAGCCTACCGCTGCAGCTATTGCTTA 4315
Query 474862 TGGTCTTGATAAG 474874
|||| | |||||
Sbjct 4316 TGGTTTGAATAAG 4328
>seq59
Length=19937
Score = 134 bits (148), Expect = 9e-26
Identities = 369/555 (66%), Gaps = 14/555 (3%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAG--CTGTTTGGCAAAATGGTA 474386
||||| || ||||||||||| ||||| ||| ||||| | | |||| | || | |
Sbjct 5755 GCAATCGGAATTGATTTAGGTACTACCTACTCCTGTGTTGGTCACTTTGCC--AACGACA 5698
Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446
||| || || |||||||| || || ||||| ||||| || ||||| |||||| | || |
Sbjct 5697 GAGTTGACATTATTGCCAACGATCAGGGTAACAGAACCACCCCATCCTATGTTGCCTTCA 5638
Query 474447 CTGAAACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505
| || ||||| | || | || || || ||||| || |||| ||||| || |||
Sbjct 5637 CAGACACTGAGAGAT-TGATCGGTGAGGCTGCCAAGAATCAGGCTGCCATGAACCCTACC 5579
Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565
|| || |||| || ||||| ||| | || ||| | || ||| ||| | |||||
Sbjct 5578 AACACAGTTTTCGACGCTAAGAGACTTATCGGTAGAAAGTTTAGCGATCCAGAGGTCCAG 5519
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623
||||||| || ||||| || ||| | || | | ||| || ||| | || ||
Sbjct 5518 AGTGATATGAAGCACTGGCCATTCAAGATTATCGACTCAGATGGAAAGCCAAAGATCCAG 5459
Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| |||| | ||||| || || | |||| || | |||| || ||||||
Sbjct 5458 GTCGACTACAAG--GGTGAGACAAAGGTTCTCACACCAGAGGAGGTTTCATCCATGGTTC 5401
Query 474684 TAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGT 474741
| ||| |||| | | |||| |||| | | |||| || || || | ||||| ||
Sbjct 5400 TCAGCAAGATGAGAGAGACCGCCGAGGCC--TTTTTGGGCAGCAAGGTTAAGGATGCCGT 5343
Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801
|||| | ||||| || || || || || || | || ||||| || ||||| || |
Sbjct 5342 TGTTACCATCCCAGCCTACTTCAACGACTCGCAGAGACAGGCAACCAAGGATGCTGGTAC 5283
Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861
||||| ||| | || || | | || || || || ||||| || || || |||||||
Sbjct 5282 CATTGCCGGTATGAACGTGATGAGAATCATCAACGAGCCAACTGCCGCAGCCATTGCTTA 5223
Query 474862 TGGTCTTGATAAGAA 474876
||| | ||||||||
Sbjct 5222 CGGTTTGGATAAGAA 5208
Score = 129 bits (142), Expect = 4e-24
Identities = 458/700 (65%), Gaps = 18/700 (3%)
Strand=Plus/Minus
Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536
|||||| ||| | | |||||||| ||||| | || ||| || | | ||||| || |
Sbjct 4997 AGCATTGAGAAGATTGAGAACTGCCTGTGAGAGAGCCAAGAGAACCTTGTCTTCCTCTGC 4938
Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTA 475595
|| ||| | | || | || || | || ||||| || || || || ||| || |
Sbjct 4937 ACAGACTTCGATCGAGATCGACTCCTTGTTCGAAGGTATCGACTTCTACACCTCG-ATCA 4879
Query 475596 CAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTG 475655
| ||||||| ||| || || || || |||||||| || ||| || | | ||| || |
Sbjct 4878 CGAGGGCTAGATTCGAGGAGATGTGCTCTGATCTGTTCAGATCCACCTTGGCACCTGTCG 4819
Query 475656 AACAAGTTCT-CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTA 475714
| | || | ||| || || || | ||||| ||||| || |||| || ||||||||
Sbjct 4818 AGAAGGTGTTGCAG-GACTCAAAGTTGGACAAGTCACAGATCGATGAGATCGTTCTTGTC 4760
Query 475715 GGAGGTTCAACAAGAATTCCAAAAAT-AAGAGAAATGCTTTCATCATATTTTAATGGTAA 475773
|| ||||| |||||||||||||| | ||| | || | || | || | || ||
Sbjct 4759 GGTGGTTCCACAAGAATTCCAAAGGTCCAGA-AGTTGGTCTCCGACTTCTTCAGCGGAAA 4701
Query 475774 AAAGTTAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAA 475831
| || ||| |||| | || ||||| || |||||||| || || || || || ||
Sbjct 4700 AGAGCCAAA--CAAGTCCATCAACCCTGACGAGGCTGTTGCTTACGGTGCCGCCGTTCAG 4643
Query 475832 GCAGCTATTTTATCAGG---TCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGAC 475888
|| || || | || || | ||||| | ||| || || | | | | ||| | ||
Sbjct 4642 GCCGCCATCCTTTCCGGTGATGAATCATCCAAGACAC--AAGACT-TGTTGCTTTTGGAT 4586
Query 475889 GTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGAC 475948
|| || ||| | || ||||| | || || | || || | ||||| || | ||
Sbjct 4585 GTCACCCCATTGTCCCTAGGTATCGAGACTGCCGGTGGTGTCATGACCAAGTTGATCCCA 4526
Query 475949 AGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAA 476008
||||| | | || || ||||| || || | | || || ||||| ||||| || |||
Sbjct 4525 AGAAACTCGACCATTCCTTGCAAGAAGTCTGAGATCTTCTCTACTTACTCTGACAACCAA 4466
Query 476009 ACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAA 476068
| ||| ||||| | | |||||||| |||| || || || || |||
Sbjct 4465 CCTGGTGTGTTGATCCAGGTTTACGAAGGTGAGAGAACTAGAACCAAGGACAACAACTTG 4406
Query 476069 CTTGGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGA 476127
| || | || | |||| || || || || ||||| || || |||||||| || ||
Sbjct 4405 TTGGGTAAGTTCGA-GTTGACTGGAATCCCACCAGCTCCAAGGGGTGTTCCTCAGATCGA 4347
Query 476128 AGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTT 476167
|||||||| ||||| ||||| || || ||| | ||||||
Sbjct 4346 GGTTACTTTCGATATCGATGCCAACGGAATTTTGAATGTT 4307
>seq423
Length=50725
Score = 127 bits (140), Expect = 1e-23
Identities = 136/177 (77%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| || |||| | ||||||| || || | ||||| |||||||| || | | ||
Sbjct 3645 TTGTAGTCAGACAAAGTTCTGCCGTCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGC 3704
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|||||||| |||||||| ||||||||||| ||||||||||||||| |||||||| ||
Sbjct 3705 TGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTTTTGTTTGACATTGTCAATAGTGTCG 3764
Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | || |||||||| || || |||||||| | ||||||||||||||||||
Sbjct 3765 GAAGACTCAA-CCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACGAAAATTTG 3820
>seq675
Length=37359
Score = 102 bits (112), Expect = 5e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 474726 AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAA 474785
|||| || |||| || ||||||| || |||||||| |||||| ||||| | || || |
Sbjct 23088 AAGTCACCCATGCGGTCGTTACTGTCCCTGCATATTTCAATGATGCTCAAAGACAGGCCA 23029
Query 474786 CTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAG 474845
| |||||||| || | ||||||||| | |||||| | | ||| | || || || || |
Sbjct 23028 CCAAAGATGCCGGTACAATTGCAGGCTTGAATGTTCTCAGAATTGTGAACGAGCCTACCG 22969
Query 474846 CAGCCGCACTTGCTTATGGTCTTGATAAG 474874
| || || ||||||||||| | ||||||
Sbjct 22968 CTGCTGCTATTGCTTATGGTTTGGATAAG 22940
>seq208
Length=10633
Score = 91.5 bits (100), Expect = 1e-12
Identities = 128/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| || |||| | ||||||| ||| || | ||||| || ||||| || | | ||
Sbjct 9500 TTGTAGTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGC 9559
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|||||||| || ||||| ||||| || || |||||||| |||||| ||||| || ||
Sbjct 9560 TGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTGTCT 9619
Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | | | ||||| | ||||| ||||| || | |||||||||||||||||
Sbjct 9620 GAAGACTCCACCTCCAAGG-TGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTG 9675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268137248834744
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