Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq66 205 6e-47 seq59 134 9e-26 seq423 127 1e-23 seq675 102 5e-16 seq208 91.5 1e-12 >seq66 Length=19490 Score = 205 bits (226), Expect = 6e-47 Identities = 473/702 (67%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536 |||||| ||| | | ||||| || || || | || ||| || | | ||||| | | Sbjct 4544 AGCATTGAGAAGATTAAGAACCGCATGCGAGAGAGCCAAGAGAACATTATCTTCCTCAGC 4603 Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTAC 475596 ||||| | ||||| |||| ||| | | || || ||||| | | || ||||| Sbjct 4604 ACAAACATCCGTTGAGATTGACTCTTTGTACGAGGGTATTGACTTCTACACATCAATTAC 4663 Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656 || || | |||||| || |||| || ||||| || ||| || | || ||||| || Sbjct 4664 GAGAGCAAGATTTGAGGAACTTTGCTCAGATCTGTTCAGATCCACTCTGGACCCCGTCGA 4723 Query 475657 ACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGG 475716 | ||||| | |||||||| || |||||||| | ||| | |||| ||||| ||||| || Sbjct 4724 AAAAGTTTTGAGAGATTCAAAGCTTGACAAGGCTCAAATAGATGAGATTGTGCTTGTCGG 4783 Query 475717 AGGTTCAACAAGAATTCCAAAAAT-AAGAGAAATGCTTTCATCATATTTTAATGGTAAAA 475775 ||||| |||||||||||||| || ||| | || |||| || || || || || Sbjct 4784 TGGTTCCACAAGAATTCCAAAGATCCAGA-AGTTGGTTTCCGATTACTTCAACGGCAAGG 4842 Query 475776 AGTTAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833 || ||| |||| | || |||||||| ||||||||||| || ||||| || || || Sbjct 4843 AGCCAAA--CAAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCAGTTCAGGC 4900 Query 475834 AGCTATTTTATCAGGTCAATCAGACG--AGAAACTAAATAATATTGTACTTGTTGACGTA 475891 || ||||| | ||| || | || | | ||| | | | | | ||| | || || Sbjct 4901 TGCCATTTTGACTGGT-GATGAATCGTCAAAGACTCAGGACT-TGTTGCTTTTGGATGTT 4958 Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951 || ||| | || || ||| |||| || | || || | ||||| || | ||| ||| Sbjct 4959 ACACCATTATCGTTGGGTATTGAGACCGCCGGTGGTGTGATGACAAAGTTGATTCCAAGA 5018 Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011 || || | || || ||||| || || | | || ||||| ||| ||||||| || || Sbjct 5019 AACTCTACAATTCCTTGCAAGAAGTCGGAGATCTTCTCCACCTATGCTGATAACCAGCCA 5078 Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT 476071 ||| || || | | || ||||| |||| || || || || ||| | Sbjct 5079 GGTGTTTTGATTCAGGTGTACGAGGGTGAGAGAACCAGAACCAAGGACAACAACTTGTTA 5138 Query 476072 GGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130 || | ||| | |||| || ||||| ||||| || ||||| ||||| || ||||| || Sbjct 5139 GGTAAGTTTGA-GTTGACTGGAATTCCACCTGCACCAAGAGGTGTTCCCCAGATTGAGGT 5197 Query 476131 TACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||| |||||||| || ||||| ||||| | |||||| |||| Sbjct 5198 TACCTTTGATATCGACGCAAACGGTATCTTGAATGTTTCTGC 5239 Score = 181 bits (200), Expect = 7e-40 Identities = 379/553 (69%), Gaps = 14/553 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 || ||||| |||||||| || ||||| ||| ||||| | | ||| ||||| || | Sbjct 3783 GCTATTGGAATTGATTTGGGTACTACGTACTCATGTGTTGGTCATTTTGCAAA-TGACAG 3841 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || ||||| |||||||| ||||| | || || || || || || |||| || Sbjct 3842 AGTTGATATCATTGCTAATGACCAGGGTAACCGTACCACTCCTTCTTACGTGGCTTTCAC 3901 Query 474448 TGAAACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506 || || || | || | ||||| || ||||| || | || || || |||||| | Sbjct 3902 AGACACCGAGAGAT-TAATTGGTGAGGCTGCCAAGAACCAGGCCGCCATGAATCCTACCA 3960 Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCA 474564 | ||| | |||||||| || ||| | || ||| | || ||| ||| ||| || || Sbjct 3961 ACACTGTCTTTGATGCAAAGAGACTTATAGGTAGGAAGTTTACTGA--CCAGGAGGTGCA 4018 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--A 474622 ||||||| || ||||| || ||||| || || || || || ||| | || | Sbjct 4019 GAATGATATGAAGCACTGGCCGTTCAAGGTTATTGATTCTGAGGGAAAGCCAAAGATTCA 4078 Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | | |||| | ||||| || || || |||| ||| |||||||||| |||||| Sbjct 4079 GGTGGAGTACAAG--GGTGAGACGAAGGTGTTCACACCAGAAGAAATTTCTTCCATGGTT 4136 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 || | || |||| | || || ||| | ||| | ||| | | || | ||||| || Sbjct 4137 TTGACTAAGATGAGAACTACAGCCGAGG-CTTATTTGGGAGAGAAGGTGAAGGATGCCGT 4195 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 |||| ||||| || ||||| || ||||| || | || |||||||||||||| || | Sbjct 4196 GGTTACCGTTCCTGCTTATTTCAACGATTCGCAGAGACAGGCAACTAAAGATGCTGGTAC 4255 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||| | || || | | |||||||| || || || || || || ||||||| Sbjct 4256 CATTGCCGGTTTGAACGTGATGAGAATTATTAACGAGCCTACCGCTGCAGCTATTGCTTA 4315 Query 474862 TGGTCTTGATAAG 474874 |||| | ||||| Sbjct 4316 TGGTTTGAATAAG 4328 >seq59 Length=19937 Score = 134 bits (148), Expect = 9e-26 Identities = 369/555 (66%), Gaps = 14/555 (3%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAG--CTGTTTGGCAAAATGGTA 474386 ||||| || ||||||||||| ||||| ||| ||||| | | |||| | || | | Sbjct 5755 GCAATCGGAATTGATTTAGGTACTACCTACTCCTGTGTTGGTCACTTTGCC--AACGACA 5698 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446 ||| || || |||||||| || || ||||| ||||| || ||||| |||||| | || | Sbjct 5697 GAGTTGACATTATTGCCAACGATCAGGGTAACAGAACCACCCCATCCTATGTTGCCTTCA 5638 Query 474447 CTGAAACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 | || ||||| | || | || || || ||||| || |||| ||||| || ||| Sbjct 5637 CAGACACTGAGAGAT-TGATCGGTGAGGCTGCCAAGAATCAGGCTGCCATGAACCCTACC 5579 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||| || ||||| ||| | || ||| | || ||| ||| | ||||| Sbjct 5578 AACACAGTTTTCGACGCTAAGAGACTTATCGGTAGAAAGTTTAGCGATCCAGAGGTCCAG 5519 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623 ||||||| || ||||| || ||| | || | | ||| || ||| | || || Sbjct 5518 AGTGATATGAAGCACTGGCCATTCAAGATTATCGACTCAGATGGAAAGCCAAAGATCCAG 5459 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | |||| | ||||| || || | |||| || | |||| || |||||| Sbjct 5458 GTCGACTACAAG--GGTGAGACAAAGGTTCTCACACCAGAGGAGGTTTCATCCATGGTTC 5401 Query 474684 TAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGT 474741 | ||| |||| | | |||| |||| | | |||| || || || | ||||| || Sbjct 5400 TCAGCAAGATGAGAGAGACCGCCGAGGCC--TTTTTGGGCAGCAAGGTTAAGGATGCCGT 5343 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 |||| | ||||| || || || || || || | || ||||| || ||||| || | Sbjct 5342 TGTTACCATCCCAGCCTACTTCAACGACTCGCAGAGACAGGCAACCAAGGATGCTGGTAC 5283 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| ||| | || || | | || || || || ||||| || || || ||||||| Sbjct 5282 CATTGCCGGTATGAACGTGATGAGAATCATCAACGAGCCAACTGCCGCAGCCATTGCTTA 5223 Query 474862 TGGTCTTGATAAGAA 474876 ||| | |||||||| Sbjct 5222 CGGTTTGGATAAGAA 5208 Score = 129 bits (142), Expect = 4e-24 Identities = 458/700 (65%), Gaps = 18/700 (3%) Strand=Plus/Minus Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536 |||||| ||| | | |||||||| ||||| | || ||| || | | ||||| || | Sbjct 4997 AGCATTGAGAAGATTGAGAACTGCCTGTGAGAGAGCCAAGAGAACCTTGTCTTCCTCTGC 4938 Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTA 475595 || ||| | | || | || || | || ||||| || || || || ||| || | Sbjct 4937 ACAGACTTCGATCGAGATCGACTCCTTGTTCGAAGGTATCGACTTCTACACCTCG-ATCA 4879 Query 475596 CAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTG 475655 | ||||||| ||| || || || || |||||||| || ||| || | | ||| || | Sbjct 4878 CGAGGGCTAGATTCGAGGAGATGTGCTCTGATCTGTTCAGATCCACCTTGGCACCTGTCG 4819 Query 475656 AACAAGTTCT-CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTA 475714 | | || | ||| || || || | ||||| ||||| || |||| || |||||||| Sbjct 4818 AGAAGGTGTTGCAG-GACTCAAAGTTGGACAAGTCACAGATCGATGAGATCGTTCTTGTC 4760 Query 475715 GGAGGTTCAACAAGAATTCCAAAAAT-AAGAGAAATGCTTTCATCATATTTTAATGGTAA 475773 || ||||| |||||||||||||| | ||| | || | || | || | || || Sbjct 4759 GGTGGTTCCACAAGAATTCCAAAGGTCCAGA-AGTTGGTCTCCGACTTCTTCAGCGGAAA 4701 Query 475774 AAAGTTAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAA 475831 | || ||| |||| | || ||||| || |||||||| || || || || || || Sbjct 4700 AGAGCCAAA--CAAGTCCATCAACCCTGACGAGGCTGTTGCTTACGGTGCCGCCGTTCAG 4643 Query 475832 GCAGCTATTTTATCAGG---TCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGAC 475888 || || || | || || | ||||| | ||| || || | | | | ||| | || Sbjct 4642 GCCGCCATCCTTTCCGGTGATGAATCATCCAAGACAC--AAGACT-TGTTGCTTTTGGAT 4586 Query 475889 GTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGAC 475948 || || ||| | || ||||| | || || | || || | ||||| || | || Sbjct 4585 GTCACCCCATTGTCCCTAGGTATCGAGACTGCCGGTGGTGTCATGACCAAGTTGATCCCA 4526 Query 475949 AGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAA 476008 ||||| | | || || ||||| || || | | || || ||||| ||||| || ||| Sbjct 4525 AGAAACTCGACCATTCCTTGCAAGAAGTCTGAGATCTTCTCTACTTACTCTGACAACCAA 4466 Query 476009 ACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAA 476068 | ||| ||||| | | |||||||| |||| || || || || ||| Sbjct 4465 CCTGGTGTGTTGATCCAGGTTTACGAAGGTGAGAGAACTAGAACCAAGGACAACAACTTG 4406 Query 476069 CTTGGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGA 476127 | || | || | |||| || || || || ||||| || || |||||||| || || Sbjct 4405 TTGGGTAAGTTCGA-GTTGACTGGAATCCCACCAGCTCCAAGGGGTGTTCCTCAGATCGA 4347 Query 476128 AGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTT 476167 |||||||| ||||| ||||| || || ||| | |||||| Sbjct 4346 GGTTACTTTCGATATCGATGCCAACGGAATTTTGAATGTT 4307 >seq423 Length=50725 Score = 127 bits (140), Expect = 1e-23 Identities = 136/177 (77%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| | ||||||| || || | ||||| |||||||| || | | || Sbjct 3645 TTGTAGTCAGACAAAGTTCTGCCGTCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGC 3704 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| |||||||| ||||||||||| ||||||||||||||| |||||||| || Sbjct 3705 TGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTTTTGTTTGACATTGTCAATAGTGTCG 3764 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || |||||||| || || |||||||| | |||||||||||||||||| Sbjct 3765 GAAGACTCAA-CCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACGAAAATTTG 3820 >seq675 Length=37359 Score = 102 bits (112), Expect = 5e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474726 AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAA 474785 |||| || |||| || ||||||| || |||||||| |||||| ||||| | || || | Sbjct 23088 AAGTCACCCATGCGGTCGTTACTGTCCCTGCATATTTCAATGATGCTCAAAGACAGGCCA 23029 Query 474786 CTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAG 474845 | |||||||| || | ||||||||| | |||||| | | ||| | || || || || | Sbjct 23028 CCAAAGATGCCGGTACAATTGCAGGCTTGAATGTTCTCAGAATTGTGAACGAGCCTACCG 22969 Query 474846 CAGCCGCACTTGCTTATGGTCTTGATAAG 474874 | || || ||||||||||| | |||||| Sbjct 22968 CTGCTGCTATTGCTTATGGTTTGGATAAG 22940 >seq208 Length=10633 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| | ||||||| ||| || | ||||| || ||||| || | | || Sbjct 9500 TTGTAGTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGC 9559 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| || ||||| ||||| || || |||||||| |||||| ||||| || || Sbjct 9560 TGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTGTCT 9619 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | ||||| | ||||| ||||| || | ||||||||||||||||| Sbjct 9620 GAAGACTCCACCTCCAAGG-TGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTG 9675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268137248834744