Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14 244 1e-59 seq187 98.7 1e-15 seq290 84.2 3e-11 >seq14 Length=27313 Score = 244 bits (270), Expect = 1e-59 Identities = 1088/1705 (64%), Gaps = 31/1705 (2%) Strand=Plus/Minus Query 75242 GGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGG 75300 || || ||||| || || ||| | || |||||| | || || |||||| | || Sbjct 18097 GGAATTCACGGTGATGATATTCCTAAAGTTTTGGAGTCGTATGATTTGATGTCGAAGAGA 18038 Query 75301 TATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTC 75360 || |||| ||||| | ||||| | || ||||| ||||| ||| | || |||||||| Sbjct 18037 TAC-TTCACACACGCCTCTCCAACATTGTTTAATGCCGGTACTCCACGCCCACAGATGTC 17979 Query 75361 CAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTAC 75420 ||||||| | | || | ||||| ||||| || | |||||||| | ||| | | Sbjct 17978 GTCTTGCTTCTTAGTTGCAATGAAGGATGACTCTATTGAAGGTATCTACGACACTTTGAA 17919 Query 75421 GGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAG 75480 ||||||| || || ||| |||||| |||||||| | || || ||| | | | Sbjct 17918 ACAGTGTGCCTTGATTTCCAAGACGGCTGGTGGTATTGGTCTACATATTCATAACATTCG 17859 Query 75481 AGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 75540 | | || ||| || || || ||| ||| ||||||||||||| ||| | Sbjct 17858 TTCTACAGGTTCATACATTGCTGGTACCAACGGTACATCCAATGGTATTATTCCTATGGT 17799 Query 75541 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----G 75595 ||| || || ||| || || | ||||| | |||| || | |||| | | Sbjct 17798 TCGTGTGTTCAACAGTACTGCTAGGTATGTTGACCAAGGTGG---TAACAAGAGACCAGG 17742 Query 75596 T-CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACG 75654 | |||| || ||||||| ||||| |||||||| |||||| | || ||| | || | | Sbjct 17741 TGCCATTGCTATCTACTTAGAACCTTGGCATGCAGATATCTTTGACTTCATCGATATCAG 17682 Query 75655 ACTCAACCAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTC 75713 || || ||| | || ||| || ||| | | ||| | || || | || ||||| | Sbjct 17681 GAAGAATCACGGTAAGGAGGAGA-TCCGTGCACGTGATTTGTTCCCAGCTCTTTGGATCC 17623 Query 75714 CAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACA 75773 | || || ||||||||||| ||||| | || | |||| || | || | ||| Sbjct 17622 CTGATCTATTCATGAAGCGTGTTGAACAAAATGATACATGGACTTTGTTTTCTCCTTCTG 17563 Query 75774 AGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATG 75833 |||| |||||||| || || | ||||| ||||||||| | ||||| || | Sbjct 17562 AGGCCCCAGGTCTTTCAGATGTTTATGGTGACGAGTTTGAAAAGTTGTACACTCGTTACG 17503 Query 75834 AAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTC 75892 | ||||||| | | | || || || | | || ||| ||| | ||| | Sbjct 17502 AGAAGGAGGGACGTGGAAGAAGAACCGT-TAAGGCTCAGAAGTTGTGGTATCAGATTTTG 17444 Query 75893 AAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAG 75952 | | ||||| || || || || || | ||| ||||||||||||| || |||| ||| Sbjct 17443 GAGGCTCAGACAGAAACCGGTACGCCTTTCATGATTTACAAGGATGCCTGCAACAGAAAG 17384 Query 75953 AGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAG 76012 ||||| |||||||| |||||||| |||||| || ||| | ||| || || | ||| Sbjct 17383 AGTAATCAAAAGAACTTGGGAACCATCAAGTCTTCGAATTTGTGCTGTGAGGTTGTCGAG 17324 Query 76013 TACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTAT 76072 ||| | | |||||| | ||| || || |||||| || | | || | | Sbjct 17323 TACTCTTCTCCAGATGAGGTCGGTGTGTGTAACTTGGCAAACATTTGCTTGCCTGCATTT 17264 Query 76073 GTCAA---TGAAGAGACTCGCACTTTTG-----ATTATGAAAAACTTCATGAAATCACAA 76124 || | || || | |||| ||| | | ||| || | || | ||||| | Sbjct 17263 GTTGAGTCCGACAAGGAT--CACTGTTGGTTCAACTTTGAGAAGTTGCACAAGATCACCA 17206 Query 76125 AGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTT-GAGACT 76183 || |||| || || | ||||| ||||||||||| |||| || || ||| ||| Sbjct 17205 AGGTTGTCACACGTAACTTGAACCGTGTCATTGACAGGAATTACTACCCAGTTCCAGA-G 17147 Query 76184 GCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 || || || || || ||| || |||||||||| | | | |||||||||||||| |||||| Sbjct 17146 GCCCGCAACTCCAACATGAGAAACAGACCTATCGCTCTTGGTGTTCAAGGTCTTGCGGAT 17087 Query 76244 GTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGT 76303 || | || | | | ||||||| | ||||| ||| | || | Sbjct 17086 ACGTTCTTCATGCTCAGATTGCCATTTGACTGCCCAGAAGCTCGTGAGCTTAACATACAG 17027 Query 76304 ATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA 76363 || || || ||| |||| || | | ||||||| | | | ||| | | Sbjct 17026 ATATTCGAGACCTTGTACCATGGTGCTCTGGAGGAATCAAATCAGCTTTCTGTGGAAGAG 16967 Query 76364 GGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATG 76423 ||| | || ||||| | || || ||||| || ||| | || | || |||| |||||| Sbjct 16966 GGTACGTACGAGACCTACGAAGGCTCTCCAGCTTCCAAGGGTATTCTCCAGTACGATATG 16907 Query 76424 TGGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGG 76481 | |||| ||| |||| || | | | || ||||| | | |||| ||| Sbjct 16906 T-GGAATAAGAAGCCAA-CTGATCTGTGGGATTGGGAGACTTTGAAGGCCAAGATCGCTA 16849 Query 76482 AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 76541 || | |||||| | || |||||| | || || |||||||| ||||| ||| | || | Sbjct 16848 AGGATGGTCTTAGAAATTCGCTTTTGGTCGCTCCTATGCCAACTGCCTCTACCTCTCAGA 16789 Query 76542 TCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCC 76601 | ||||| | || || |||||||| |||| ||| | |||||||| | ||||||| | Sbjct 16788 TTATGGGTTACAACGAGTGCTTTGAGCCATTCACCTCTAACATCTATCAGAGAAGAGTTC 16729 Query 76602 TCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTC 76661 | || |||||||| |||||||| || | | | ||||| | | || || Sbjct 16728 TTGCTGGTGAGTTCCAGATTGTCAATCCTTACATGCTAAGGGACCTTATTGATATGGGAA 16669 Query 76662 TCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCT 76721 | ||| | | | |||||| || |||| | | | ||| |||||||| || | Sbjct 16668 TATGGAACGATGCAATGAAGAATTTCATCATTCATGACAATGGATCCATTCAGAACTTAC 16609 Query 76722 CAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAG 76781 | |||| ||||| | || ||||| | ||| | || || |||||| | |||| Sbjct 16608 CTAATATTCCAGACAACATTAAGAAATTGTACAGGACTGTTTGGGAACTTTCTCAGAAAT 16549 Query 76782 ATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATC 76841 |||||| |||||||| || || | ||| || |||| || |||| ||||| Sbjct 16548 CTGTCATCGACATGGCTGCCGACAGAGGTGCCTACATTTGCCAGTCTCAATCCATGAACA 16489 Query 76842 TATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAAC 76901 | | || || ||||| ||| ||| | | || ||||| | |||| ||||| Sbjct 16488 TCCACTTGCAATCGCCAACTATGGGTAAGTTGACGTCCATGCACTTTTACGGCTGGAAGA 16429 Query 76902 AGGGGCTCAAAACCGGAATGTACTA 76926 |||| | || || || |||||||| Sbjct 16428 AGGGTTTGAAGACAGGTATGTACTA 16404 >seq187 Length=11729 Score = 98.7 bits (108), Expect = 1e-15 Identities = 291/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 75608 TACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGG 75666 || ||||| || |||||||| || |||||||| ||||| || || | || ||||| || Sbjct 2179 TATTTGGAGCCGTGGCATGCAGACATCATGGAATTCCTCGATTTGAAGAAA-AACCACGG 2237 Query 75667 TGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCAT 75726 | || ||| ||| | ||||| || | | |||||||||| ||| | ||||| Sbjct 2238 CAAGGAGGAGATGCGGGCCCGGGATCTATTCTATGCATTGTGGATTCCCGACTTGTTCAT 2297 Query 75727 GAAGCGGGTTGAGGAGGGT--GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGT 75784 | |||||| ||| ||| ||| ||| |||||||| |||| ||| || || Sbjct 2298 GCGGCGGGTCGAGAAGGACCAGGTG--TGGAGTCTTTTCTCCGAGGACACGGCCCCGGGG 2355 Query 75785 CTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGT 75844 | || ||| | ||| | ||||| || | || ||| | || || | ||||| Sbjct 2356 TTGTCGGACACATGGGGGGCCGAGTTCGAGTCTCTGTACGAGCAATACGAGCAAGAGGGC 2415 Query 75845 AG--AGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGA 75902 | | | || || || | ||| | || ||| || ||| | | || |||| Sbjct 2416 CGGTACCTAAGGCAGGTGAAG--GCCCGTAAGGTCTGGGAGAGGATTGTGTACTCGCAGA 2473 Query 75903 CGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAA 75962 |||||||||| ||||| | |||||| ||||| ||||| || ||| ||| | ||||| | Sbjct 2474 CGGAGACTGGGACACCGTTTATGCTCTACAAAGATGCGTGCAACGCGAAATGCAACCAGA 2533 Query 75963 AGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATA 76022 |||| | || || |||||| || ||||| ||| || | | |||||| | | Sbjct 2534 AGAACCTCGGCACGATCAAGTCGTCGAATCTCTGCTGCGAGGTGGTCGAGTACTCGTGCA 2593 Query 76023 AGGATGAGACGGCTGTTTGCAA 76044 ||||||||| || || ||||| Sbjct 2594 AGGATGAGATCGCGGTGTGCAA 2615 >seq290 Length=58723 Score = 84.2 bits (92), Expect = 3e-11 Identities = 278/422 (66%), Gaps = 18/422 (4%) Strand=Plus/Minus Query 65104 GAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTC 65163 |||||| | |||||||| || || || | |||| | |||||||||||| | ||| | Sbjct 53215 GAGGGTGTTTTCTTCTCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGGTTTG 53156 Query 65164 ATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAG 65223 ||||| || || |||||| ||||| ||||||| | | ||||||||||| || || Sbjct 53155 ATGCCTGGACTTACCTTCTCCAATGAGCTTATTTGCAGGGATGAGGGTCTACATACTGAT 53096 Query 65224 TTTGC---CGTGGAGCTCT-TCAAGACTTTGCGTAATAGACCCACTACCGAAACTATCCA 65279 || || | | | ||| ||| |||| || ||| | || | | ||| | Sbjct 53095 TTCGCATGCCTCTTGTTCTCTCA----TTTGAAGCATCCACCTAGTAAGGTTATTATTAA 53040 Query 65280 CGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTG---GACGCACTCCC 65336 || ||| ||||| || | |||||| ||| || ||| | || || ||||| Sbjct 53039 GAAAATTATGACCGAGGCTGTCAATATTGAG-AAGACTT--TCTGGAGTGATGCTCTCCC 52983 Query 65337 ATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTG-AGTATGTGTCGG 65395 | | | | | |||||||||| || | |||| || | || ||| | | |||| | | Sbjct 52982 AGTTTCTTTGCTTGGTATGAACTTCGATATGATGGCCCATTATGTTGAATTCTGTG-CCG 52924 Query 65396 ATCGTCTCCTCAAACAAGTTGGGGTGCCACCCA-TTTGGAACGCGAAGAATCCATTTGAC 65454 | | | || | ||||| || | | ||| || || | |||||||| ||| Sbjct 52923 ACAGATTGCT-TATTGCTTTGGGATGTGAGAAAGTTTACAATGCTACCAATCCATTCGAC 52865 Query 65455 TTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGAC 65514 |||||||| |||||| | | | ||| ||||| ||||||||||||||| ||||| ||| Sbjct 52864 TTTATGGAGAACATTTCCTTGGCTGGTAAGACTAACTTCTTTGAGAAGAGAGTTTCTGAC 52805 Query 65515 TA 65516 || Sbjct 52804 TA 52803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562306936640