Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq290 122 1e-22 seq208 122 1e-22 seq423 111 2e-19 >seq290 Length=58723 Score = 122 bits (134), Expect = 1e-22 Identities = 569/880 (65%), Gaps = 52/880 (6%) Strand=Plus/Plus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | ||||| ||||| || ||||| || |||| || || | |||||| || ||| Sbjct 52812 ACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAAT 52871 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT-AATCTATCTGCTAC 17997 ||||| || | || ||| ||| || | || | |||| ||||| || || || Sbjct 52872 GGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCA-ATAAGCAATCTGTCGGC-AC 52929 Query 17998 A-AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAA--GGTAG 18054 | ||||| ||||| || | ||||| |||| | |||||||| || | |||| || || Sbjct 52930 AGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAA--GAAACTGGGAG 52987 Query 18055 AGCATCAATA-ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCC 18113 ||||||| | | ||| |||| ||| || | |||| ||| | || || ||| ||| Sbjct 52988 AGCATCACTCCAGAAAGTCTT-CTCAATATTGACAGCCTCGGTCATAAT-TTTCTTAA-- 53043 Query 18114 TAGATTTTGGCAATTTATTAATTATGTGATTATAAT------ATAATAAACACGCAAAAT 18167 || || | ||| || | || || ||| | || | || || |||| Sbjct 53044 TA-ATA-----ACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGAAAT 53097 Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTA 18227 |||| |||| ||| ||||| ||| | || | || || || || | || ||||| | Sbjct 53098 CAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCATCA 53157 Query 18228 TACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCA 18286 |||||| || || | ||| || || || || |||| | | ||| ||||| | |||||| Sbjct 53158 AACCTCTCTTCTTCAACCAGAAGATAGAGGC-AAACGAGCCAGAGAAGAAAACACCCTCG 53216 Query 18287 ACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTAT--TTATTGCTCAGTATCCAT 18343 | | || || || | ||||| |||||| | | | || | |||| | ||||||| Sbjct 53217 ATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCATCATTGTT---TATCCAT 53273 Query 18344 TTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAA 18403 | |||||| | | ||| || || | | |||||||| ||||| Sbjct 53274 CTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATGGATAGCATTGAACAAG 53333 Query 18404 TCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAA 18463 | || || || || | || || || || | ||| | || || | ||||| Sbjct 53334 TAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTAAAAGGGAGTAGGTCTCAGAG 53393 Query 18464 TGTATGCTTTC---CATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGA 18520 || ||| | || |||| ||||| |||| ||||| | ||| || || || ||||| Sbjct 53394 TGGATGTTCTCAACCATA---ATCTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGA 53450 Query 18521 ATCTCGCT--ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | || ||| || |||| ||| | |||| ||||| | ||| ||||| |||| || || | Sbjct 53451 ACCT-GCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAA 53508 Query 18579 AAAATGCCAAAACA---TATTTAATGAA---ATGTTTTTCATTATCCTTGAGATTGTTCC 18632 |||||||||||||| || ||| | | | || |||| |||| ||||||| Sbjct 53509 AAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCATCTTG---TTGTTCC 53565 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | ||| | || || || ||||||| || || | ||||||||||| | || |||| Sbjct 53566 AGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCT 53625 Query 18693 GTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || ||||||| | ||||| || | || ||||| || Sbjct 53626 TCTTATACATTTGCCATATATCATCGTACTGAATAGGGAA 53665 >seq208 Length=10633 Score = 122 bits (134), Expect = 1e-22 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || |||| || ||||| || || ||||| || || || || || | Sbjct 9681 AAAATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCT 9622 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || | || || || ||||| || || || || || || Sbjct 9621 TCAGACACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATCCCACCTGAT 9562 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || |||||||| | ||||||||||||| | || ||| ||||||||| || || || Sbjct 9561 CAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCTGACTAC 9502 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | | ||||||| ||| | || ||||| || || || ||||| ||||| ||| Sbjct 9501 A--ACATCCAAAAGGAGTCAACTCTTCACTTGGTCTTGAGATTGAGAGGAGGT 9451 >seq423 Length=50725 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || |||| || ||||| || || || || || | || || || | Sbjct 3826 AAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACCATCACCCTTGAGGTTGAGTCT 3767 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| || || ||| | || || ||||| || || || || || || || Sbjct 3766 TCCGACACTATTGACAATGTCAAACAAAAGATCCAAGACAAGGAGGGAATTCCACCTGAT 3707 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || |||||||| | ||| ||||||||| | || || ||||||||| || || || Sbjct 3706 CAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGACGGCAGAACTTTGTCTGACTAC 3647 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || ||| | || ||||| || || || ||||| ||||| ||| Sbjct 3646 AACATTCAGAAGGAGTCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 3596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731863052864800