Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq423 134 3e-26 seq208 125 1e-23 seq290 96.9 7e-15 >seq423 Length=50725 Score = 134 bits (148), Expect = 3e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||||||||| | | || || || || | ||| | ||| || || || || |||| Sbjct 3595 TACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAG 3654 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || |||| | || ||||| || |||||||||||||| |||||||| |||||||||| Sbjct 3655 ACAAAGTTCTGCCGTCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTG 3714 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||| || || ||||| || || | ||| ||||| |||| || || || || | Sbjct 3715 GAATTCCCTCCTTGTCTTGGATCTTTTGTTTGACATTGTCAATAGTGTCGGAAGACTCAA 3774 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| ||||| || || || |||| || || |||||||| Sbjct 3775 CCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 3826 >seq208 Length=10633 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| ||||| ||||| | | || || || || | ||| | ||| || ||| || || Sbjct 9445 AATGATACCTCCTCTCAATCTCAAGACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTA 9504 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||| || |||| |||| ||||| || ||||| |||||||| |||||||| ||||| Sbjct 9505 GTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATC 9564 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 |||||| ||||| || ||||| || || || | || ||||| || | ||||| || Sbjct 9565 AGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTGTCTGAAGA 9624 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || | || || || ||||| || || || |||| || || |||||||| Sbjct 9625 CTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 9681 >seq290 Length=58723 Score = 96.9 bits (106), Expect = 7e-15 Identities = 249/368 (68%), Gaps = 15/368 (4%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT-A 49650 |||||| || |||||||| | | ||| ||| ||| || | | ||| || |||| | Sbjct 52859 CATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCA-ATAAGCA 52917 Query 49651 ATCTATCGGCTACA-AATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 |||| ||||| ||| ||||||||||| || | ||| | || | |||||||| | || Sbjct 52918 ATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAA 52976 Query 49710 TTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagctt--gtt-taat 49765 || ||| | |||||| || | ||| |||| | | || | ||||| | || |||| Sbjct 52977 GAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAAT 53035 Query 49766 tatcataattatattattttttgataatttatatttaatatgattcgcatatattaaACA 49825 | || |||| ||| || | | | || || | |||| | | | | || Sbjct 53036 TTTCTTAATAATAACCTTACTAGGTGG---ATGCTTCAAATGA---GAGAACAAGAGGCA 53089 Query 49826 TGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 49885 ||| ||||||||||||| |||||| ||||| | |||| ||||| || || | ||| Sbjct 53090 TGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCC 53149 Query 49886 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 49945 ||||| || |||||||| || | ||| || || || ||||| | ||| ||||| | Sbjct 53150 AGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAAC 53209 Query 49946 ACCCTCGA 49953 |||||||| Sbjct 53210 ACCCTCGA 53217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984467663850300