Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq423 134 3e-26
seq208 125 1e-23
seq290 96.9 7e-15
>seq423
Length=50725
Score = 134 bits (148), Expect = 3e-26
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367
|||||||||| | | || || || || | ||| | ||| || || || || ||||
Sbjct 3595 TACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAG 3654
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || |||| | || ||||| || |||||||||||||| |||||||| ||||||||||
Sbjct 3655 ACAAAGTTCTGCCGTCCTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGATCAGGTG 3714
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| ||||| || || ||||| || || | ||| ||||| |||| || || || || |
Sbjct 3715 GAATTCCCTCCTTGTCTTGGATCTTTTGTTTGACATTGTCAATAGTGTCGGAAGACTCAA 3774
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| ||||| || || || |||| || || ||||||||
Sbjct 3775 CCTCAAGGGTGATGGTCTTACCGGTCAAAGTCTTAACGAAAATTTGCATTTT 3826
>seq208
Length=10633
Score = 125 bits (138), Expect = 1e-23
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362
||| ||||| ||||| | | || || || || | ||| | ||| || ||| || ||
Sbjct 9445 AATGATACCTCCTCTCAATCTCAAGACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTA 9504
Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422
||||| || |||| |||| ||||| || ||||| |||||||| |||||||| |||||
Sbjct 9505 GTCAGACAAAGTTCTGCCATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATC 9564
Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482
|||||| ||||| || ||||| || || || | || ||||| || | ||||| ||
Sbjct 9565 AGGTGGGATTCCCTCCTTATCCTGGATCTTTTGCTTGACATTGTCAATGGTGTCTGAAGA 9624
Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || | || || || ||||| || || || |||| || || ||||||||
Sbjct 9625 CTCCACCTCCAAGGTGATAGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 9681
>seq290
Length=58723
Score = 96.9 bits (106), Expect = 7e-15
Identities = 249/368 (68%), Gaps = 15/368 (4%)
Strand=Plus/Plus
Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT-A 49650
|||||| || |||||||| | | ||| ||| ||| || | | ||| || |||| |
Sbjct 52859 CATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAAAGCA-ATAAGCA 52917
Query 49651 ATCTATCGGCTACA-AATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709
|||| ||||| ||| ||||||||||| || | ||| | || | |||||||| | ||
Sbjct 52918 ATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAA 52976
Query 49710 TTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagctt--gtt-taat 49765
|| ||| | |||||| || | ||| |||| | | || | ||||| | || ||||
Sbjct 52977 GAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAAT 53035
Query 49766 tatcataattatattattttttgataatttatatttaatatgattcgcatatattaaACA 49825
| || |||| ||| || | | | || || | |||| | | | | ||
Sbjct 53036 TTTCTTAATAATAACCTTACTAGGTGG---ATGCTTCAAATGA---GAGAACAAGAGGCA 53089
Query 49826 TGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 49885
||| ||||||||||||| |||||| ||||| | |||| ||||| || || | |||
Sbjct 53090 TGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCC 53149
Query 49886 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 49945
||||| || |||||||| || | ||| || || || ||||| | ||| ||||| |
Sbjct 53150 AGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAAC 53209
Query 49946 ACCCTCGA 49953
||||||||
Sbjct 53210 ACCCTCGA 53217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984467663850300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |