Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq187 111 2e-18 seq65 93.3 7e-13 seq112 87.8 3e-11 >seq187 Length=11729 Score = 111 bits (122), Expect = 2e-18 Identities = 323/492 (66%), Gaps = 18/492 (4%) Strand=Plus/Minus Query 2069259 GGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTCTTGAG 2069318 ||| |||| |||||| | || ||| | | |||| | || ||||||||||||||||| | Sbjct 3620 GGTGAACTTGATGGCCTGGGAGGCGGCCTGGGTCCTCAAGTAGTACATGCCGGTCTTCAA 3561 Query 2069319 GCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGGACGGCACA 2069378 ||| |||| || ||| |||||| || || || ||| || | | | Sbjct 3560 GCCCTTGTGCCAGGCATAGAAGTGCATGCTGGTCAT---CTTGGCGAGCGTGCAGTCCTT 3504 Query 2069379 GT---AGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCATGTC 2069435 | ||||||| | ||| ||||| || ||||| || |||||||| |||||||| Sbjct 3503 GAGGAAGAGGTTCATGCTCTGTGATTGGTCAACGTAGGGAGCACGGTCGGCAGCCATGTC 3444 Query 2069436 GATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCGGCGG 2069495 ||| | | | |||| ||||| ||||||||| | || ||| ||| ||| Sbjct 3443 AATGATGATCTTCTGCGACATGTCCCAGACGGTCTTGTAGAGTTGTTTGGTATGTTCCGG 3384 Query 2069496 CACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCGCGAAA 2069555 | || | | | |||| | ||||| | || ||||| | |||| | Sbjct 3383 GATGCCGGCT------ATGTCCTGGATGGAGCCGTTTGCGGCGATAATCTGGTCCTTCAT 3330 Query 2069556 GTCGGGCGTCCACAGGCCGCGCGCCATCATGCGC-TCGACCAGGTGGCGGTTGACCAC-- 2069612 || | |||||||||| | | || | | ||||| || | |||||| || Sbjct 3329 GTGTGCATTCCACAGGCCCAGA-CGGTCTAGATCATCGACGAGATACGAGTTGACTACCT 3271 Query 2069613 GGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGC 2069672 ||| ||||| ||||| || | ||||||||||||||| |||||| |||| | Sbjct 3270 GGTGC--TCGCCAGAGAGAACTCTTCGCGTGTAGATGTTGGAAGTGATGGGCTCGAAGCA 3213 Query 2069673 CTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGA 2069732 ||| ||| |||||||||||||| |||| |||||||||||||| ||||| | ||||| Sbjct 3212 CTCCGTGAACCCCAGGATCTGCGAGGTCGATGCCGTGGGCATGAGGGCCACCAAGAGCGA 3153 Query 2069733 GTTGCGCAGGCC 2069744 |||||| ||||| Sbjct 3152 GTTGCGGAGGCC 3141 Score = 100 bits (110), Expect = 5e-15 Identities = 181/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| ||||| || ||| ||| || || |||||||| || || | |||| | Sbjct 2148 GCCCTGGTCCACATACTTGGCAGTGCTGTTGAACACCCGGAGCATCGGAACTATGCCGCT 2089 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTG-TGCGCGGCAA 2073655 ||| ||||||||||||| | ||| | || | || || || || || | ||| Sbjct 2088 GGATGTCCCGTTGGTGCCCGAAATGTACGTTCCGGCCGCCCGAACGTTACTGAGGTGCAT 2029 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 ||||| || || || || || ||||| | ||| ||| | || |||| | |||| | Sbjct 2028 T-CCGATTCCACCCGCGGCTTTCGAGATCATCGCACACCCGTGCACCGTCCGGAAGATCC 1970 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCG 2073775 | || | ||||||| || || | ||| ||| |||||||||||| | |||| | ||| Sbjct 1969 CGTCCAACGAGTCGCTCTGCAAGCCCACCAGGAAGCACGACGAGAGGTTCGGGAACTCCG 1910 Query 2073776 TGCCGGCATTGAAGAGCGTGGG 2073797 | || || ||||| | |||||| Sbjct 1909 TTCCTGCGTTGAACAACGTGGG 1888 Score = 89.7 bits (98), Expect = 8e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 2071852 ACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTC 2071911 || || ||||| |||| |||| |||||| | || || ||||| || ||||| || Sbjct 2306 ACCCGCCGCATGAACAAGTCGGGAATCCACAATGCATAGAATAGATCCCGGGCCCGCATC 2247 Query 2071912 TCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGC 2071971 ||||||||||||||||| || |||| ||||| | || | || ||| || ||||||||| Sbjct 2246 TCCTCCTTGCCGTGGTTTTTCTTCAAATCGAGGAATTCCATGATGTCTGCATGCCACGGC 2187 Query 2071972 TCCA 2071975 |||| Sbjct 2186 TCCA 2183 >seq65 Length=19570 Score = 93.3 bits (102), Expect = 7e-13 Identities = 132/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 || |||||| ||||| || |||| || | |||||||| || || ||||| |||||| Sbjct 14489 ACGTTCCGGATCAACTTGTCCGTCACCACTCCTTACAACGCTGATTTCGACGGTGACGAG 14548 Query 429693 ATGAACCTGCACGTGCCCCAGTCG---GAGATGGCACGCGCCGAAGTCGCCCACACCATG 429749 |||||| |||||||||| |||||| |||| | | | || ||| ||| | | | Sbjct 14549 ATGAACATGCACGTGCCACAGTCGTACGAGACG--AAG-GCGGAACTCGAGGAGATCTGT 14605 Query 429750 GGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATG 429809 | |||| ||| || |||||| |||||| ||||||||||| |||| || | ||| | Sbjct 14606 GCCGTGCCCCGGCAGATCGTGTCACCGCAGTCCAACAAGCCCGTCATGGGCATTGTGCAG 14665 Query 429810 GAC 429812 ||| Sbjct 14666 GAC 14668 >seq112 Length=141941 Score = 87.8 bits (96), Expect = 3e-11 Identities = 166/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || || ||||||| || || ||||| ||| | |||| ||| || ||| Sbjct 11768 TGTACTTAGTAACAGCTCTGGTACCTTCAGAAACGGCATGCTTAGCCAATTCACCTGGCA 11709 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| | || || ||||||||||| | || | || ||| |||||| || Sbjct 11708 AGATCAATCTGACAGCAGTCTGGATCTCTCTGGCGGAAATGGTGGACTTCTTGTT-GTAA 11650 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||||| | | | || | |||| || ||||| || || |||||| Sbjct 11649 GCAGCCAACTTGGAAGCCTCAGAGGCAATTCTCTCGAAAATATCGTTAACGAAAGAGTTC 11590 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | | | | ||||| || ||| ||||| ||||| | ||||||| Sbjct 11589 ATGATAGACATGGCTCTTCTAGAGATACCAGTGTCCGGGTGAGTTTGCTTCAACACCTTG 11530 Query 1485709 TA 1485710 || Sbjct 11529 TA 11528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916142365679342