Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq187 125 1e-22 seq290 100 4e-15 >seq187 Length=11729 Score = 125 bits (138), Expect = 1e-22 Identities = 322/489 (66%), Gaps = 10/489 (2%) Strand=Plus/Plus Query 262917 TGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCT 262976 |||||| ||||||||| | | ||||| |||||||||||||| |||| ||||||||||| Sbjct 3140 TGGCCTCCGCAACTCGCTCTTGGTGGCCCTCATGCCCACGGCATCGACCTCGCAGATCCT 3199 Query 262977 GGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTC 263036 ||| ||| ||| |||||| |||||| ||||||||||||||| | || ||||| Sbjct 3200 GGGGTTCACGGAGTGCTTCGAGCCCATCACTTCCAACATCTACACGCGAAGAGTTCTCTC 3259 Query 263037 GGGCGACTTTACC--GTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTG 263094 ||||| ||| || |||||| | || ||| | | | | |||||| Sbjct 3260 TGGCGA--GCACCAGGTAGTCAACTCGTATCTCGTCGATGATCTAGACCGTCTGGGCCTG 3317 Query 263095 TGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGAC 263154 |||| | || | |||| | | || || ||| | ||||| | |||| | | | | Sbjct 3318 TGGAATGCACACATGAAGGACCAGATTATCGCCGCAAACGGCTCCATCCAGGACATAGCC 3377 Query 263155 GACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAAC 263214 | | | ||| || ||| |||| ||||||||| ||||| || | | Sbjct 3378 GGC------ATCCCGGAACATACCAAACAACTCTACAAGACCGTCTGGGACATGTCGCAG 3431 Query 263215 CGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTC 263274 | | | |||||| ||||| |||||||| || ||||| || ||||| ||| | Sbjct 3432 AAGATCATCATTGACATGGCTGCCGACCGTGCTCCCTACGTTGACCAATCACAGAGCATG 3491 Query 263275 AACCTGTACCTCGCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGG 263334 ||||| | |||| ||| ||| || | || || |||||| |||||| ||| Sbjct 3492 AACCTCTTCCTCAAGGACTGCACGCTCGCCAAGATGACCAGCATGCACTTCTATGCCTGG 3551 Query 263335 CGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATT 263394 | ||| | ||||| ||||||||||| || | |||| | |||| || | ||||| Sbjct 3552 CACAAGGGCTTGAAGACCGGCATGTACTACTTGAGGACCCAGGCCGCCTCCCAGGCCATC 3611 Query 263395 CAATTCACC 263403 | |||||| Sbjct 3612 AAGTTCACC 3620 >seq290 Length=58723 Score = 100 bits (110), Expect = 4e-15 Identities = 348/537 (65%), Gaps = 12/537 (2%) Strand=Plus/Minus Query 1455746 TTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGC 1455805 ||||| ||||||| || | ||| | |||||| ||||||| || ||||| ||||| Sbjct 53674 TTTGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTAT-AAGAAGGCGGAGGC 53616 Query 1455806 CTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTC--- 1455862 ||| |||||||| || |||||| | || ||| ||| | ||||| Sbjct 53615 CTCTTTTTGGACTGCTGAGGAGATTGATCTCTCTAAGGACTTGACTGACTGGAACAACAA 53556 Query 1455863 GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCG 1455922 | ||| | | ||||| | | || || || || | || |||||| ||||| | Sbjct 53555 GATGAATGCCAACGAGAGATACTTTATATCGCGTGTTTTGGCATTTTTT-GCCGCTTCTG 53497 Query 1455923 ATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982 |||| || || | ||||||| |||| || ||||| |||| ||||| ||||| | Sbjct 53496 ATGGTATTGTTGACGAGAACTTGGCACAAAATTTCATGAAGCAGGTTCAATTACCAGAAG 53437 Query 1455983 CACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGC 1456042 || | |||||||| |||||||| | || |||||||||||||| |||||||| | Sbjct 53436 CAAGAGCCTTTTACGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACCTACTCCC 53377 Query 1456043 TCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCG 1456102 | | | || || ||| ||| ||| | ||| ||| || | || || ||| Sbjct 53376 TTTTACTTGAAACGTACATCACCGACAAGAAGGAGTCCGACTACTTGTTCAATGCTATCC 53317 Query 1456103 ACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG 1456162 | || | || | | | | ||||||| ||||| ||| ||||| ||||| || | Sbjct 53316 ATACCATTCCACCTATTAAGGAAAAGGCTCTATGGGCTTTGAGATGGATAAACAATGATG 53257 Query 1456163 --GCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC 1456219 || | | | ||| ||| | | |||| |||||| | | ||||||| | || ||| Sbjct 53256 ATGCTTTG----TATGCTGAGAGATTGGTCGCCTTTGCTGCCATCGAGGGTGTTTTCTTC 53201 Query 1456220 TCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 || ||| || | | ||||| ||| | |||||| | || | ||||| || ||| Sbjct 53200 TCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCTGGACTT 53144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177716870102436