Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq14 262 5e-65 seq290 246 4e-60 >seq14 Length=27313 Score = 262 bits (290), Expect = 5e-65 Identities = 743/1131 (66%), Gaps = 14/1131 (1%) Strand=Plus/Plus Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 ||||| || |||| || | |||||||||||| |||| ||||| |||||||||| || Sbjct 17355 TTGATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATG 17414 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT 69468 || || ||||| ||||| |||||| || | ||| | ||| | | ||| || Sbjct 17415 AAAGGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACAACTTCTGAGCCTTA 17474 Query 69469 ATTACGGT-CTTGTAACGCTTCTCT--TTTTCATATTGTGTATATAGCCGTTCGAATTCA 69525 | |||| ||| | | | || || || || || | || || | | ||| || || Sbjct 17475 A---CGGTTCTTCTTCCACGTCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAACTCG 17531 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || ||||||| | || || ||| ||| | | ||| | ||| |||| Sbjct 17532 TCACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCA 17591 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | | ||| || ||||| |||||||| || |||||||||||| || | ||| | Sbjct 17592 TTTTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGT 17651 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | | | || || || || ||| || | | ||||| || || | ||||| | | Sbjct 17652 GCACGGATCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCA 17711 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 ||||| ||||||| || || || ||| | || |||| || || || || || || | Sbjct 17712 TGCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACA 17771 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 || || ||||| | || | || | | ||| |||||||||||||| ||| |||| || Sbjct 17772 TACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCGTTG 17831 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 || |||| ||| || ||| | | ||||| ||| |||| |||||| || || || Sbjct 17832 GTACCAGCAATGTATGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCA 17891 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 ||| | || || || | ||||| ||||||| ||||| || ||||| || || ||| Sbjct 17892 GCCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCA 17951 Query 69946 TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAAT 70005 || |||| || | || || ||||| || | || ||| || |||||||| Sbjct 17952 TCCTTCATTGCAACTAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAAC 18011 Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCT 70065 ||||| ||||| ||||| ||||| || | | || | || || || | || | | || Sbjct 18012 AATGTTGGAGAGGCGTGTGTGAAGTATCTCTTCGACATCAAATCATACGACTCCAAAACT 18071 Query 70066 GATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCG 70124 ||||| ||| | |||||||| | || || | ||| | | ||||||||| | Sbjct 18072 TTAGGAATATCATCACCG-TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCT 18130 Query 70125 TTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAA 70184 ||| | ||| |||||| ||||||| ||||| || || || ||||| ||||| Sbjct 18131 CTCTGCAACCTTACCATTTATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAA 18190 Query 70185 ATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATAT 70242 ||||| || ||||| || | || || |||| | || || | | |||||| | Sbjct 18191 GTAGTTATAGCTGAAA--TCACGGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGC 18248 Query 70243 TTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGA 70302 || | || || | ||| ||||| || || ||| || |||| || Sbjct 18249 TTCATGACAATCTTGTAAACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTTGGG 18308 Query 70303 TTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGT 70362 ||| ||||||| | | |||||| || |||||| ||| | || || || | |||||| Sbjct 18309 TTATAATAGTTGTAAAGATCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTGTGC 18368 Query 70363 AAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAA 70422 ||||| || ||||| | |||||| || | | ||||||| || ||||| ||||| || Sbjct 18369 AAATTAGAAATGGCAAGTCTGGCGGCCAAAGTAGCATAATCTGGATGAATGGTAGT-CAT 18427 Query 70423 GTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCC 70472 || || || |||| |||| ||| | || || || ||||| ||||| || Sbjct 18428 ATATGCCGCAGTTTCAGCAGTTAAGTTGTCCAACTCAATAGTGGTAACACC 18478 Score = 93.3 bits (102), Expect = 6e-14 Identities = 497/786 (63%), Gaps = 11/786 (1%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 |||| | |||||| | ||||||||||| || |||| ||| |||| ||||| || Sbjct 16386 GCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAACCCTTCTTCCAGCCGTAAAAG 16445 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA--TGAATATTCATCGATTGAC 68512 ||||| || | || | |||| || | | || || ||||| |||||| Sbjct 16446 TGCATGGACGTCAACTTACCCATAGTTGG--CGATTGCAAGTGGATGTTCATGGATTGAG 16503 Query 68513 TTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTT 68572 || ||| | || ||||| || || ||||| | || | | || |||| || || Sbjct 16504 ACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGATGACAGATTTCTGAGAAAGTT 16563 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG-TA--TTTTGAATGG 68629 |||||| |||| | | | | || || | ||||||| | | || || ||||||| Sbjct 16564 CCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAATATTAGGTAAGTTCTGAATGG 16623 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 ||||| || || || | |||||| || |||| ||||| | | | || | | Sbjct 16624 ATCCATTGTCATGAATGATGAAATTCTTCATTGCATCGTTCCATATTCCCATATCAATAA 16683 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 | || || | | ||||| || || || || || |||| | ||||| | | Sbjct 16684 GGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCACCAGCAAGAACTCTTCTCTGAT 16743 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 | || ||| ||| |||| || | | || || | |||| ||| |||| || || | Sbjct 16744 AGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAACCCATAATCTGAGAGGTAGAGG 16803 Query 68810 CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTT 68869 ||||||||||||| || ||||| | |||||||||||||| | ||| || | | Sbjct 16804 CAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGACCATCCTTAGCGATCTTGGCCT 16863 Query 68870 TTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAA 68929 | | | | ||||||||| ||||||| ||| |||||| | |||||| || |||| Sbjct 16864 TCAAAGTCTCCCAATCCCACAGATCAGTTGGCTTCTTATTCCACATATCGTACTGGAGAA 16923 Query 68930 TTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTT 68989 | || || || || || | || || || || | || || | ||| || | Sbjct 16924 TACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTACGTACCCTCTTCCACAGAAAGCT 16983 Query 68990 CACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 69049 | | |||| | ||||| | || | || ||||| |||| | || || || Sbjct 16984 GATTTGATTCCTCCAGAGCACCATGGTACAAGGTCTCGAATATCTGTATGTTAAGCTCAC 17043 Query 69050 GTGCTTCTAGACTATCGAATGGATAATGTAA--AAGAATAAATGCATCTGCCAATCCCTG 69107 | |||||| | | || ||||| ||| | | | ||| || | ||| || | || || Sbjct 17044 GAGCTTCTGGGCAGTCAAATGG-CAATCTGAGCATGAA-GAACGTATCCGCAAGACCTTG 17101 Query 69108 AACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATA 69167 ||| |||| | |||||||||| | |||| | || || | || ||||||| || || Sbjct 17102 AACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGTTGCGGGCCTCTGGAACTGGGTA 17161 Query 69168 ATAATT 69173 ||||| Sbjct 17162 GTAATT 17167 >seq290 Length=58723 Score = 246 bits (272), Expect = 4e-60 Identities = 603/905 (67%), Gaps = 12/905 (1%) Strand=Plus/Plus Query 39305 TCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTT 39364 |||| || |||||| || || ||||| ||| ||| | ||||| || || ||||| Sbjct 52776 TCTTTTGCCATAACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTC 52835 Query 39365 TTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttttt 39424 || || |||| || || || ||||| || || || ||||| || ||||| || ||| Sbjct 52836 TTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTC 52895 Query 39425 ttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATT 39484 | | |||| || | || |||||| || ||| ||||| | || |||||| Sbjct 52896 TCACATCCCAAAGCAATAAGCAATCTGTCGGCACAGAATTCAACATAATGGGCCATCATA 52955 Query 39485 TCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT-AGAAACTCTTTTTCGAT 39543 || | ||||| || | | |||||| ||||| || | ||||| |||| | | || Sbjct 52956 TCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAAT 53014 Query 39544 GTCTACGGCCTCTGTTATTATCGATGTTACTACCT-CATCACTCGGTGGATGCAATAAAT 39602 | || ||||| || || || | ||| || | | ||| ||||||||| |||| Sbjct 53015 ATTGACAGCCTCGGTCATAATTT-TCTTAATAATAACCTTACTAGGTGGATGCTTCAAAT 53073 Query 39603 GTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662 | |||| | ||| ||||| ||| |||||| |||||||| || | ||| | || | Sbjct 53074 GAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCAT 53133 Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 | || || || ||||||||||| | ||| | ||| || | ||| || || | ||||| | Sbjct 53134 TGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACG 53193 Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGT---AAC 39779 | ||||| ||||| | || || | || ||||| || || | |||||| | | || Sbjct 53194 AGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAG 53253 Query 39780 TTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTG 39839 |||||| | |||||| || ||||| ||| || | ||| | | || || | Sbjct 53254 CATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGG 53313 Query 39840 TTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899 | | |||||||| || | || | || | | || | | || || || | || Sbjct 53314 TATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTCGGTGATGTACGTTTCAAGTA 53373 Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATC 39959 | || || | || || |||||||| |||| | ||||| || |||||||| || Sbjct 53374 AAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTC 53433 Query 39960 TTGCTTCAGTAATTTGTACCT-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 ||||||| | | ||| |||| || | |||| ||| ||||| || || | || || Sbjct 53434 TTGCTTCTGGTAATTGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATA 53492 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 |||||| |||||||||||||||||| ||| | ||||| ||| | || | || || Sbjct 53493 CCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTC 53552 Query 40079 A---ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAC 40135 | || ||||||||| | | || || || | ||| | || ||||| |||||||| Sbjct 53553 ATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAA 53612 Query 40136 GACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACA 40195 || ||||| ||||| || ||||| | |||||||||| || || || || || || ||| Sbjct 53613 GAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACA 53672 Query 40196 AATCT 40200 ||||| Sbjct 53673 AATCT 53677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900402539920