Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq290 152 4e-32 seq15 114 1e-20 >seq290 Length=58723 Score = 152 bits (168), Expect = 4e-32 Identities = 395/595 (66%), Gaps = 14/595 (2%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| |||| || ||||| || |||| |||||||||||||| || || || || Sbjct 53677 AGATTTGTGATGTTCCCTATTCAGTACGATGATATATGGCAAATGTATAAGAAGGCGGAG 53618 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC- 43815 || || |||||||| || || || ||||| | |||| ||||| | | |||| Sbjct 53617 GCCTCTTTTTGGACTGCTGAGGAGATTGATCTCTCTAAGGACTTGACTGACTGGAACAAC 53558 Query 43816 ---ATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 || || ||| | || | | | |||||||| |||||||| |||||||| || Sbjct 53557 AAGATGAATGCCA-ACGAGAGATACTTTATATCGCGTGTTTTGGCATTTTTTGCCGCTTC 53499 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAG-TTCAATTACCAG 43931 || || || || | || || |||| | ||| ||| || |||||||||||| Sbjct 53498 TGATGGTATTGTTGACGAGAACTTGGC-ACAAAATTTCATGAAGCAGGTTCAATTACCAG 53440 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 ||||| || ||||| || || || ||| | || || || || || || | ||| Sbjct 53439 AAGCAAGAGCCTTTTACGGTTTCCAGATTATGGTTGAGAACATCCACTCTGAGACCTACT 53380 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGA 44051 ||| | | || |||||||||| || | | ||| | ||||| ||||| | Sbjct 53379 CCCTTTTACTTGAAACGTACATCACCGACAAGAAGGAGTCCGACTACTTGTTCAATGCTA 53320 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 | | || | || | ||||| | || || ||||| | | ||||||||| ||| Sbjct 53319 TCCATACCATTCCACCTATTAAGGAAAAGGCTCTATGGGCTTTGAGATGGATAAA--CAA 53262 Query 44112 --ATGATTCTTT---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 ||||| |||| || || || | ||||| ||||| | | || || ||||||| Sbjct 53261 TGATGATGCTTTGTATGCTGAGAGATTGGTCGCCTTTGCTGCCATCGAGGGTGTTTTCTT 53202 Query 44167 TTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || || |||||||| | || || ||||| ||||| |||||||||||||||| | || Sbjct 53201 CTCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCTGGACTTAC 53142 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || |||||| | || | | ||||| || ||||| ||||| || ||| Sbjct 53141 CTTCTCCAATGAGCTTATTTGCAGGGATGAGGGTCTACATACTGATTTCGCATGC 53087 >seq15 Length=27206 Score = 114 bits (126), Expect = 1e-20 Identities = 311/468 (66%), Gaps = 20/468 (4%) Strand=Plus/Minus Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA 40921 ||||| |||||| || || | ||||||||||| | | | |||||||| ||| |||| | Sbjct 9651 TGAAGATGATCTAGGACCAATATATGGATTTCAATGGAGGCATTTTGGGGCAGAATACAA 9592 Query 40922 C-ACTATGTACTCTGATTATACCAATAAAGGAATGGATCA-ATTACAGTGCGTTATAGAT 40979 ||| || || | |||||||| |||||| || || ||| | | | |||| | Sbjct 9591 GGACTGTG-ACACGGATTATACTGGTAAAGGCTATGACCAGATTGC-GCACATTATCCAC 9534 Query 40980 ACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039 || | ||| | |||| || ||| | ||||| | | || ||||| || ||| | Sbjct 9533 ACATTAAAAACAAATCCTTATGATCGAAGAATAATTCTTTCAGCATGGAATCCTCCGGCC 9474 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT----TT--GC 41093 | | ||||||||| |||||||| ||| | | || ||||| ||||| || | Sbjct 9473 TTCAAAAAGATGGCATTACCACCTTGCCATGTCATGTGCCAGTTCTACGTGAGTTTCAGA 9414 Query 41094 AATGGTGAAC------TGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGG 41147 | ||| | | || ||||| ||||||| ||||| | || | || || || Sbjct 9413 ACTGGAAAGCCAAGGTTGAGTTGTCAGATGTATCAGAGATCGTGCGATGTTGGTCTTGGT 9354 Query 41148 GTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 || || ||||| ||||| |||||| | ||||| |||||||||||| ||| || Sbjct 9353 GTTCCATTTAATATAGCTTCGTATGCTTTACTCACATATATGATTGCAATGGTTTGTGAT 9294 Query 41208 TTAAAACCTGGTGAATTTGTTCACACGTTA--GGAGATGGACATATTTACATTAATCACA 41265 | |||| || ||||||||| || |||| |||||| || ||||| ||||||| Sbjct 9293 ATGGAACCGGGCGAATTTGTT--CATGTTATGGGAGATTCGCACATTTATTGTAATCACG 9236 Query 41266 TAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAA 41313 | || | | | ||||| || |||| || ||||||||||||| Sbjct 9235 TCGAAGCAATCAAGTCGCAACTTGCAAGAAAGCCAAGACCATTTCCAA 9188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451262572890