Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14 233 2e-56 seq290 82.4 1e-10 >seq14 Length=27313 Score = 233 bits (258), Expect = 2e-56 Identities = 1089/1707 (64%), Gaps = 35/1707 (2%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||| | || | ||||| |||| | ||||| || | | ||| Sbjct 16404 TAGTACATACCTGTCTTCAAACCCTTCTTCCAGCCGTAAAAGTGCATGGACGTCAACTTA 16463 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG-CGCCC 110487 ||| ||||| || || | || |||||| |||| ||| |||| || | || Sbjct 16464 CCCATAGTTGGCGATTGCAAGTGGATGTTCATGGATTGAGACTGGCAAATGTAGGCACCT 16523 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAG 110547 | || | || ||||| || |||||| ||| || ||||||||| || | || | Sbjct 16524 CTGTCG-GCAGCCATGTCGATGACAGATTTCTGAGAAAGTTCCCAAACAGTCCTGTACAA 16582 Query 110548 ATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCAT 110607 ||||| || | ||||| |||| | | ||||| ||||| || | | | || Sbjct 16583 TTTCTTAATGTTGTCTGGAATATTAGGTAAGTTCTGAATGGATCCATTGTCATGAATGAT 16642 Query 110608 GAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTT 110667 || || |||||| | | | ||| | || || | | ||||| | | | || Sbjct 16643 GAAATTCTTCATTGCATCGTTCCATATTCCCATATCAATAAGGTCCCTTAGCATGTAAGG 16702 Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||||| |||||||| || || ||||||| | |||||||| | ||| |||| Sbjct 16703 ATTGACAATCTGGAACTCACCAGCAAGAACTCTTCTCTGATAGATGTTAGAGGTGAATGG 16762 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 |||||||| || || | ||||| || || | ||| ||||| |||||||| || || | Sbjct 16763 CTCAAAGCACTCGTTGTAACCCATAATCTGAGAGGTAGAGGCAGTTGGCATAGGAGCGAC 16822 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 110847 |||||| || | |||||| | || ||| |||| | | ||||| || | Sbjct 16823 CAAAAGCGAATTTCTAAGACCATCCTTAGCGATCTTGGCCTTCAAAGTCTCCCAATCCCA 16882 Query 110848 --GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGA 110905 | | || |||| ||| |||| |||| || |||| || | || | ||| || ||| Sbjct 16883 CAGATCAG-TTGGCTTCTTATTCC-ACATATCGTACTGGAGAATACCCTTGGAAGCTGGA 16940 Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 110965 || || || |||| || || | ||| | | ||| | | | ||||||| Sbjct 16941 GAGCCTTCGTAGGTCTCGTACGTACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCAGA 17000 Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025 | | || |||| ||| || || || | || | ||| ||||| | ||| Sbjct 17001 GCACCATGGTACAAGGTCTCGAATATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCA 17060 Query 111026 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 111085 |||| | | | || | || |||||| |||||||||||||| | | | |||||| Sbjct 17061 AATGGCAATCTGAGCATGAAGAACGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGT 17120 Query 111086 CTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGAC 111144 |||| || ||| || || || || || ||| ||| || || |||| ||||||||||| Sbjct 17121 CTGTTTCTCATGTTGGAGTTGCGGGCC-TCTGGAACTGGGTAGTAATTCCTGTCAATGAC 17179 Query 111145 TCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT-----CA 111199 ||||| | || || |||| ||| ||||| | || | || ||| | | || Sbjct 17180 ACGGTTCAAGTTACGTGTGACAACCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCA 17239 Query 111200 AAAGTGCGAGTCTCTTCA---TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256 | |||| | || || | ||| | || | | || |||||| || || Sbjct 17240 ACAGTG--ATCCTTGTCGGACTCAACAAATGCAGGCAAGCAAATGTTTGCCAAGTTACAC 17297 Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316 ||| | |||||| | | |||||| | || || || || || ||| ||| Sbjct 17298 ACACCGACCTCATCTGGAGAAGAGTACTCGACAACCTCACAGCACAAATTCGAAGACTTG 17357 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || ||||| |||||||| |||||||| ||||||| ||||||||||| | |||| | Sbjct 17358 ATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAA 17417 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTAC 111435 ||||| || || || ||||| | | | ||| | ||| ||| || | | || Sbjct 17418 GGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACAACTTCTGAGCCT----T 17473 Query 111436 AATGG--CGT-TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 || || | | | | ||||||||| |||||| ||||| | ||||||||| || Sbjct 17474 AACGGTTCTTCTTCCACGTCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAACTCGTC 17533 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | || || |||||||| |||| ||| | || | || |||| | || Sbjct 17534 ACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCATT 17593 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TAC 111611 || ||||| ||||||||||| || || || ||||| || | || || | ||| | | | Sbjct 17594 TTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGC 17653 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || || ||| || | ||| || || | | || | ||| || | |||||| || | Sbjct 17654 ACGGA-TCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCAT 17712 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACA 111727 |||| || || | |||| || || | || || | | ||| |||| | ||| Sbjct 17713 GCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTG-TTACCACCTTGGTCAACA 17771 Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787 || | || || ||| || || |||| ||| ||||||||||||| ||| ||| || Sbjct 17772 TACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCGTTG 17831 Query 111788 GTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847 || || ||| || | | | | | ||| || || | |||||||| ||| Sbjct 17832 GTACCAGCAATGTATGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCA 17891 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 ||| ||| || || ||||||| | | ||| | |||||||| | || ||||| Sbjct 17892 GCCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCA 17951 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 111967 ||||| | || | | ||||||| |||||||| || | ||| ||||| ||||| || Sbjct 17952 TCCTTCATTGCAACTAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAAC 18011 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGAC 112026 | ||||| | ||||| |||| || || | |||||| || || | |||||| || Sbjct 18012 AATGTTGGAGAGGCGTGTGTGAA-GTATCTCTTCGACATCAAATCATACGACTCCAAAAC 18070 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCC 112053 | ||| || || ||||| || || Sbjct 18071 TTTAGGAATATCATCACCGTGAATTCC 18097 >seq290 Length=58723 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||||||||| | | ||||||| ||||| |||||| || || ||||| | ||| Sbjct 53103 TGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCATCAAACCT 53162 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 | |||||||||||| | |||| | || || || |||||||| | |||||| Sbjct 53163 CTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCTC 53215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024322308800