Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 163 3e-35 >seq14 Length=27313 Score = 163 bits (180), Expect = 3e-35 Identities = 360/529 (68%), Gaps = 8/529 (2%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233 |||| ||||||| ||||| | ||| | || ||| | || || |||||||| || | Sbjct 18133 GAGAGGCCTCAGCATCTTCTTATGAGAGTTGCCGTTGGAATTCACGGTGATGATATTCCT 18074 Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAAC 53292 || ||| |||| || || ||| | || || ||||| || |||||| | ||||| Sbjct 18073 AAAGTTTTGGAGTCGTATGATTTGATGT-CGAAGAGATACTTCACACACGCCTCTCCAAC 18015 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 |||| || || ||||| | ||| ||||||||| |||||| | || || ||||| Sbjct 18014 ATTGTTTAATGCCGGTACTCCACGCCCACAGATGTCGTCTTGCTTCTTAGTTGCAATGAA 17955 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||||||||| || || || |||||||| || | || |||||||| || |||||| Sbjct 17954 GGATGACTCTATTGAAGGTATCTACGACACTTTGAAACAGTGTGCCTTGATTTCCAAGAC 17895 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGG 53471 | | |||||||| ||| | || | || ||| | ||| | | || || || | Sbjct 17894 GGCTGGTGGTATTGGTCTACA-TATTCATAACATTCGTTCTACAGGTTCATACATTGCTG 17836 Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531 | || ||||| || |||| || | |||||| | || || ||||||| || || Sbjct 17835 GTACCAACGGTACATCCAATGGTATTATTCCTATGGTTCGTGTGTTCAACAGTACTGCTA 17776 Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 |||| || |||| |||||| ||| | | ||| | | || || |||||| | || || Sbjct 17775 GGTATGTTGACCAAGGTGGTAACAAGAGACCAGGTGCCATT-GCTATCTACTTAGAACCT 17717 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| || || || | || || |||| | | |||||| ||| | || ||||| Sbjct 17716 TGGCATGCAGATATCTTTGACTTCATCGATATCAGGAAGAATCACGGTAAGGAGGAGATC 17657 Query 53651 CGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 || ||| ||||| |||| ||||||| ||||| || || || |||||| Sbjct 17656 CG-TGCACGTGATTTGTTCCCAGCTCTTTGGATCCCTGATCTATTCATG 17609 Score = 129 bits (142), Expect = 6e-25 Identities = 545/849 (64%), Gaps = 34/849 (4%) Strand=Plus/Minus Query 55098 ACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCG 55157 ||||||| ||| | ||| | | || ||||| || || ||| ||||||| ||||| | Sbjct 17232 ACTTTGAGAAGTTGCACAAGATCACCAAGGTTGTCACACGTAACTTGAACCGTGTCATTG 17173 Query 55158 ACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCG 55217 ||| |||||||||||| | || ||| ||||| |||||| | | || | || |||| Sbjct 17172 ACAGGAATTACTACCCAGTTCCAGAGGCCCGCAACTCCAACATGAGAAACAGACCTATCG 17113 Query 55218 CCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACT--- 55274 | | ||||| || || | || || | ||| | |||||| ||||||| || |||| Sbjct 17112 CTCTTGGTGTTCAAGGTCTTGCGGATACGTTCTTCATGCTCAGATTGCCATTTGACTGCC 17053 Query 55275 CGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTC 55333 | ||| ||||| || ||||| | || ||| || | | | ||| || || || Sbjct 17052 CAGAA---GCTCGTGAGCTTAACATACAGATATTCGAGAC-CTTGTACCATGGTGCTCTG 16997 Query 55334 GAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCA 55393 ||||| || ||| || || || ||||| || |||||||| | | | || ||| Sbjct 16996 GAGGAATCAAATCAGCTTTCTGTGGAAGAGGGTACGTACGAGACCTACGAAGGCTCTCCA 16937 Query 55394 GCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG------TCTGACCCCATGT-- 55445 ||| |||||| ||||||||| |||| | ||| ||| |||| | ||| Sbjct 16936 GCTTCCAAGGGTATTCTCCAGTACGATATGTGGAATAAGAAGCCAACTGATC---TGTGG 16880 Query 55446 --TT--GACAAGTTGAAG--CATGACATTCACT-TGTGGGGCCTACGCAACTCCCTGCTC 55498 || || | |||||| || || || || | || || | || || || | Sbjct 16879 GATTGGGAGACTTTGAAGGCCAAGA---TCGCTAAGGATGGTCTTAGAAATTCGCTTTTG 16823 Query 55499 GTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAG 55558 || || || |||||||| || || || ||||||| ||||| |||||||| || ||| Sbjct 16822 GTCGCTCCTATGCCAACTGCCTCTACCTCTCAGATTATGGGTTACAACGAGTGCTTTGAG 16763 Query 55559 CCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAAC 55618 || | ||| | |||||||| | | | | || || |||||||| || |||| Sbjct 16762 CCATTCACCTCTAACATCTATCAGAGAAGAGTTCTTGCTGGTGAGTTCCAGATTGTCAAT 16703 Query 55619 AAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC-CCGCAGATCAAGACGGA 55677 || | | | |||||| | || | |||||| ||| || |||| Sbjct 16702 CCTTACATGCTAAGGGACCTTATTGATATGGGAATATGGAACGATGCA-ATGAAGAATTT 16644 Query 55678 TATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGCGTCTCAAGGA 55734 || | | || || ||| | ||||| | | ||||| | ||| | Sbjct 16643 CATCATTCATGACAATGGATCCATTCAGAACTTACCTAATATTCCAGACAACATTAAGAA 16584 Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCG 55794 | ||| |||| || ||||| || | ||||| | | || |||||| ||| || | Sbjct 16583 ATTGTACAGGACTGTTTGGGAACTTTCTCAGAAATCTGTCATCGACATGGCTGCCGACAG 16524 Query 55795 TGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGC 55854 ||||| ||||| |||||| || || |||||||| | || | || | ||| Sbjct 16523 AGGTGCCTACATTTGCCAGTCTCAATCCATGAACATCCACTTGCAATCGCCAACTATGGG 16464 Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 ||||||| || |||||||||||||| ||||||||||| | ||||| ||||||||||| Sbjct 16463 TAAGTTGACGTCCATGCACTTTTACGGCTGGAAGAAGGGTTTGAAGACAGGTATGTACTA 16404 Query 55915 TCTGCGGAC 55923 |||| || Sbjct 16403 CTTGCGTAC 16395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209310284400