Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016-
09-05] 978 sequences; 11,766,522 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq14 163 3e-35
>seq14
Length=27313
Score = 163 bits (180), Expect = 3e-35
Identities = 360/529 (68%), Gaps = 8/529 (2%)
Strand=Plus/Minus
Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACG 53233
|||| ||||||| ||||| | ||| | || ||| | || || |||||||| || |
Sbjct 18133 GAGAGGCCTCAGCATCTTCTTATGAGAGTTGCCGTTGGAATTCACGGTGATGATATTCCT 18074
Query 53234 CGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAAC 53292
|| ||| |||| || || ||| | || || ||||| || |||||| | |||||
Sbjct 18073 AAAGTTTTGGAGTCGTATGATTTGATGT-CGAAGAGATACTTCACACACGCCTCTCCAAC 18015
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
|||| || || ||||| | ||| ||||||||| |||||| | || || |||||
Sbjct 18014 ATTGTTTAATGCCGGTACTCCACGCCCACAGATGTCGTCTTGCTTCTTAGTTGCAATGAA 17955
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
||||||||| || || || |||||||| || | || |||||||| || ||||||
Sbjct 17954 GGATGACTCTATTGAAGGTATCTACGACACTTTGAAACAGTGTGCCTTGATTTCCAAGAC 17895
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGG 53471
| | |||||||| ||| | || | || ||| | ||| | | || || || |
Sbjct 17894 GGCTGGTGGTATTGGTCTACA-TATTCATAACATTCGTTCTACAGGTTCATACATTGCTG 17836
Query 53472 GGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCC 53531
| || ||||| || |||| || | |||||| | || || ||||||| || ||
Sbjct 17835 GTACCAACGGTACATCCAATGGTATTATTCCTATGGTTCGTGTGTTCAACAGTACTGCTA 17776
Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
|||| || |||| |||||| ||| | | ||| | | || || |||||| | || ||
Sbjct 17775 GGTATGTTGACCAAGGTGGTAACAAGAGACCAGGTGCCATT-GCTATCTACTTAGAACCT 17717
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
||||| || || || | || || |||| | | |||||| ||| | || |||||
Sbjct 17716 TGGCATGCAGATATCTTTGACTTCATCGATATCAGGAAGAATCACGGTAAGGAGGAGATC 17657
Query 53651 CGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698
|| ||| ||||| |||| ||||||| ||||| || || || ||||||
Sbjct 17656 CG-TGCACGTGATTTGTTCCCAGCTCTTTGGATCCCTGATCTATTCATG 17609
Score = 129 bits (142), Expect = 6e-25
Identities = 545/849 (64%), Gaps = 34/849 (4%)
Strand=Plus/Minus
Query 55098 ACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCG 55157
||||||| ||| | ||| | | || ||||| || || ||| ||||||| ||||| |
Sbjct 17232 ACTTTGAGAAGTTGCACAAGATCACCAAGGTTGTCACACGTAACTTGAACCGTGTCATTG 17173
Query 55158 ACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCG 55217
||| |||||||||||| | || ||| ||||| |||||| | | || | || ||||
Sbjct 17172 ACAGGAATTACTACCCAGTTCCAGAGGCCCGCAACTCCAACATGAGAAACAGACCTATCG 17113
Query 55218 CCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACT--- 55274
| | ||||| || || | || || | ||| | |||||| ||||||| || ||||
Sbjct 17112 CTCTTGGTGTTCAAGGTCTTGCGGATACGTTCTTCATGCTCAGATTGCCATTTGACTGCC 17053
Query 55275 CGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTC 55333
| ||| ||||| || ||||| | || ||| || | | | ||| || || ||
Sbjct 17052 CAGAA---GCTCGTGAGCTTAACATACAGATATTCGAGAC-CTTGTACCATGGTGCTCTG 16997
Query 55334 GAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCA 55393
||||| || ||| || || || ||||| || |||||||| | | | || |||
Sbjct 16996 GAGGAATCAAATCAGCTTTCTGTGGAAGAGGGTACGTACGAGACCTACGAAGGCTCTCCA 16937
Query 55394 GCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG------TCTGACCCCATGT-- 55445
||| |||||| ||||||||| |||| | ||| ||| |||| | |||
Sbjct 16936 GCTTCCAAGGGTATTCTCCAGTACGATATGTGGAATAAGAAGCCAACTGATC---TGTGG 16880
Query 55446 --TT--GACAAGTTGAAG--CATGACATTCACT-TGTGGGGCCTACGCAACTCCCTGCTC 55498
|| || | |||||| || || || || | || || | || || || |
Sbjct 16879 GATTGGGAGACTTTGAAGGCCAAGA---TCGCTAAGGATGGTCTTAGAAATTCGCTTTTG 16823
Query 55499 GTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAG 55558
|| || || |||||||| || || || ||||||| ||||| |||||||| || |||
Sbjct 16822 GTCGCTCCTATGCCAACTGCCTCTACCTCTCAGATTATGGGTTACAACGAGTGCTTTGAG 16763
Query 55559 CCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAAC 55618
|| | ||| | |||||||| | | | | || || |||||||| || ||||
Sbjct 16762 CCATTCACCTCTAACATCTATCAGAGAAGAGTTCTTGCTGGTGAGTTCCAGATTGTCAAT 16703
Query 55619 AAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC-CCGCAGATCAAGACGGA 55677
|| | | | |||||| | || | |||||| ||| || ||||
Sbjct 16702 CCTTACATGCTAAGGGACCTTATTGATATGGGAATATGGAACGATGCA-ATGAAGAATTT 16644
Query 55678 TATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGCGTCTCAAGGA 55734
|| | | || || ||| | ||||| | | ||||| | ||| |
Sbjct 16643 CATCATTCATGACAATGGATCCATTCAGAACTTACCTAATATTCCAGACAACATTAAGAA 16584
Query 55735 GATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCG 55794
| ||| |||| || ||||| || | ||||| | | || |||||| ||| || |
Sbjct 16583 ATTGTACAGGACTGTTTGGGAACTTTCTCAGAAATCTGTCATCGACATGGCTGCCGACAG 16524
Query 55795 TGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGC 55854
||||| ||||| |||||| || || |||||||| | || | || | |||
Sbjct 16523 AGGTGCCTACATTTGCCAGTCTCAATCCATGAACATCCACTTGCAATCGCCAACTATGGG 16464
Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914
||||||| || |||||||||||||| ||||||||||| | ||||| |||||||||||
Sbjct 16463 TAAGTTGACGTCCATGCACTTTTACGGCTGGAAGAAGGGTTTGAAGACAGGTATGTACTA 16404
Query 55915 TCTGCGGAC 55923
|||| ||
Sbjct 16403 CTTGCGTAC 16395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547209310284400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |