Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq423 129 7e-25 seq14 129 7e-25 seq208 120 3e-22 seq187 100 3e-16 >seq423 Length=50725 Score = 129 bits (142), Expect = 7e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27388 GCCAGAAATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACT 27447 |||||| || ||| | ||||||||| || || ||||| | ||||| ||||| || || Sbjct 3841 GCCAGATATCTTATCAAAATGCAAATTTTCGTTAAGACTTTGACCGGTAAGACCATCACC 3782 Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507 |||||||||||||| || | |||| ||| | || || || || ||||||||| Sbjct 3781 CTTGAGGTTGAGTCTTCCGACACTATTGACAATGTCAAACAAAAGATCCAAGACAAGGAG 3722 Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| || || |||||| | | || |||||||||||||| | ||||| | | Sbjct 3721 GGAATTCCACCTGATCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAGGACGGCAGA 3662 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || | | ||||| || | || ||||| ||||||||||| Sbjct 3661 ACTTTGTCTGACTACAACATTCAGAAGGAGTCCACTCTTCA 3621 >seq14 Length=27313 Score = 129 bits (142), Expect = 7e-25 Identities = 781/1243 (63%), Gaps = 41/1243 (3%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||| |||| ||| | || |||| || || ||||| || || | |||||||||| Sbjct 16904 CCACATATCGTACTGGAGAATACCCTTGGAAGCTGGAGAGCCTTCGTAGGTCTCGTACGT 16963 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||| | | |||| | || ||| || || | || || | | ||| || Sbjct 16964 ACCCTCTTCCACAGAAAGCTGATTTGATTCCTCCAGAGCACCATGGTACAAGGTCTCGAA 17023 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 | |||| | | || || | |||| ||| || | ||| | | ||| | ||| Sbjct 17024 TATCTGTATGTTAAGCTCACGAGCTTCTGGGCAGTCAAATGGCAATCTGAGCATGAAGAA 17083 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCT 80779 | || || || || ||||| || | ||||| || | || | | |||| || | || Sbjct 17084 CGTATCCGCAAGACCTTGAACACCAAGAGCGATAGGTCTGTTTCTCATGTTGGAGTTGCG 17143 Query 80780 CGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAA 80839 |||||| |||| |||||| | || | || ||||| ||||||| ||| ||||| |||| Sbjct 17144 -GGCCTCTGGAACTGGGTAGTAATTCCTGTCAATGACACGGTTCAAGTTACGTGTGACAA 17202 Query 80840 CCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG-----GTTCCCCTTC-------A 80887 || || | | || | |||| ||||| ||| | ||| || | Sbjct 17203 CCTTGGTGATCTTGTGCAACTTCTCAAAGTTGAACCAACAGTGATCCTTGTCGGACTCAA 17262 Query 80888 CAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAA 80947 ||||||| || | || | | |||| || ||||| | ||||| || | | | Sbjct 17263 CAAATGCAGGCAAGCAAATGTTTGCCAAGTTACACACACCGACCTCATCTGGAGAAGAGT 17322 Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 ||||||| | || ||||||||| |||||||| || || |||| ||| || || || Sbjct 17323 ACTCGACAACCTCACAGCACAAATTCGAAGACTTGATGGTTCCCAAGTTCTTTTGATTAC 17382 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || |||||||| |||| | || |||||||| || ||| | || Sbjct 17383 TCTTTCTGTTGCAGGCATCCTTGTAAATCATGAAAGGCGTACCGGTTTCTGTCTGAGCCT 17442 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCG 81123 | || | ||| | || | ||||| || | ||| | | | ||| | Sbjct 17443 CCAAAATCTGATACCACAACTTCTGAGCCTTAACGGTTCTTCTTCC---ACGTCCCTCCT 17499 Query 81124 GCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGG 81182 | | || | ||| | ||| || |||| | |||| | || || | || |||| Sbjct 17500 TCT-CGTAACGAGTGTACAACTTT-TCAAACTCGTCACCATAAACATCTGAAAGACCTGG 17557 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGC---CTTCATGAA 81239 | ||| ||| | | || ||| || || || | | || | ||||||||| Sbjct 17558 GGCCTCAGAAGGAGAAAACAAAGTCCAT---GTATCATTTTGTTCAACACGCTTCATGAA 17614 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCT 81298 ||||||||||| || || | ||||| || || ||| || |||||| | ||| | Sbjct 17615 TAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTGCA-CGGATCTCCTCCTTACCGT 17673 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 | || | | |||| ||||| | ||| || |||||||| || || | || | | Sbjct 17674 GATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCATGCCAAGGTTCTAAGTAGATAG 17733 Query 81359 CGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 | || | || |||| || |||| |||| || || | ||||| ||| | Sbjct 17734 CAATGGCACCTGGTCTCTTGTTAC---CACCTTGGTCAACATACCTAGCAGTACTGTTGA 17790 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | ||||| | |||||| || ||||||| || |||||| ||||| | || || | Sbjct 17791 ACACACGAACCATAGGAATAATACCATTGGATGTACCGTTGGTACCAGCAATGTATGAAC 17850 Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 | | | || | || || ||||| || ||||| | | ||| |||||| | Sbjct 17851 CTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCAGCCGTCTTGGAAATCAAGG 17910 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 ||||| | |||| || || || || || || || || | ||||| ||| |||| Sbjct 17911 CACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCATCCTTCATTGCAACTAAGA 17970 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAA 81652 | || |||||||| |||| | | |||||||| |||| |||||| | ||||| Sbjct 17971 AGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACAATGTTGGAGAGGCGTGTG 18030 Query 81653 TGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGT 81712 |||| || | || ||||||| ||||| | ||| || |||||||| ||||||| Sbjct 18031 TGAAGTATCTCTTCGACATCAAATCATACGACTCCAAAACTTTAGGAATATCATCACCGT 18090 Query 81713 GAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755 |||| || | || || | ||||| | | ||| ||| |||| Sbjct 18091 GAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTCTC 18133 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || |||| |||||||| || ||||| | ||||||||||||||||| | |||| Sbjct 16389 GCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAACCCTTCTTCCAGCCGTAAAAGTGC 16448 Query 80092 ATAGAACTGAGCTT-CGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACT 80149 || || | | ||| | || ||| ||| | | | || | |||||||| || ||||||| Sbjct 16449 ATGGACGTCAACTTACCCATAGT-TGGCGAT-TGCAAGTGGATGTTCATGGATTGAGACT 16506 Query 80150 GACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCC 80209 | || ||| | || || | || || ||||| || || | || || || | || ||||| Sbjct 16507 GGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGATGACAGATTTCTGAGAAAGTTCCC 16566 Query 80210 ATACTGTACGATACA 80224 | || || | |||| Sbjct 16567 AAACAGTCCTGTACA 16581 >seq208 Length=10633 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | || || |||||||| || | ||||| ||||| Sbjct 9679 AATGCAAATTTTCGTTAAGACCTTGACGGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 9620 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||| || || ||||| ||||||||||| || || || || Sbjct 9619 AGACACCATTGACAATGTCAAGCAAAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 9560 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| |||||||| | ||||||| | || | | ||||| || Sbjct 9559 GCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAGGATGGCAGAACTTTGTCTGACTACAA 9500 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| || |||||||| | |||||| Sbjct 9499 CATCCAAAAGGAGTCAACTCTTCACTTGGTCTTG 9466 >seq187 Length=11729 Score = 100 bits (110), Expect = 3e-16 Identities = 350/542 (65%), Gaps = 22/542 (4%) Strand=Plus/Minus Query 80533 CTGTGACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTC 80592 ||||| ||||||||||||| ||| | | || | | |||||| || ||| ||| ||| Sbjct 3013 CTGTG-CCCCACATGTCGTACTGGAGAACCCCGTTTGCCGCCGGGGAGCCCCAGAATGTC 2955 Query 80593 TCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATG 80652 || ||||||||| | |||||| || ||||| ||||||||||| || ||| Sbjct 2954 GAATAAGGGCCCTCCCGCCGGGCCAGGTCCGCCGACTGGTCCAGGGCCGCGTGGTAGATG 2895 Query 80653 CACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATC 80712 || |||| | | ||||| | | ||||| || ||| | | |||| | | || | Sbjct 2894 GTCTGGAAGATGGCTTTGTTGAGGCGGCGCGACTCAGGGCTGCCAAACGCGTACCGCAGC 2835 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | | || |||| ||||||||||| || || | || | || | ||| ||| ||||| Sbjct 2834 CTGAAAAAAGCGTCTGCCAGGCCCTGGACACCAACTGCAACGGGCCTGTGCCGCGTGTTC 2775 Query 80773 GATCGCTCGGC-CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCG 80831 || | ||| || ||| | ||||| || || |||||||| |||||||| Sbjct 2774 GA-CACTCTGCACTCGTCCAGAGGGTACGCACCCACGTCTATCACGCGGTTGAGGTTGCG 2716 Query 80832 TGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA------------TTG--- 80876 || || | ||||| ||||| || || | || ||| ||| Sbjct 2715 GACAAGCACTCTGACCACATCGTGAAGCTTGTGCAGGTTGAAAAAAAGGCCTCCTTGCCC 2656 Query 80877 GTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC 80936 || ||| |||||| ||| | | | || | || |||||||| || | ||| || Sbjct 2655 GTCGTCCTCCACAAACATCGGCAACCCGACCGAGCCGAGGTTGCACACCGCGATCTCATC 2596 Query 80937 --AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 ||| || ||||||| | || ||| | ||| || ||||| || || || ||| Sbjct 2595 CTTGCACGAGT--ACTCGACCACCTCGCAGCAGAGATTCGACGACTTGATCGTGCCGAGG 2538 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTC 81054 || |||||||| | || |||||||| || || |||||| ||| |||| || || ||| Sbjct 2537 TTCTTCTGGTTGCATTTCGCGTTGCACGCATCTTTGTAGAGCATAAACGGTGTCCCAGTC 2478 Query 81055 TC 81056 || Sbjct 2477 TC 2476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303427955360