Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq423 143 6e-29 seq208 143 6e-29 seq257 84.2 5e-11 >seq423 Length=50725 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||||||||| || || ||||| || || | | || || || || |||| ||| Sbjct 3620 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTTCTGCCGTCCTCCAACTG 3679 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | | || || ||||| |||| ||| |||||||| |||||||| Sbjct 3680 CTTACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCCTCCTTGTCTTGGATCTT 3739 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||| || || || || ||||| || |||||||| || ||||| ||||| || || Sbjct 3740 TTGTTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCAAGGGTGATGGTCTTACCGGT 3799 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| || || | |||||||| Sbjct 3800 CAAAGTCTTAACGAAAATTTGCATTTT 3826 >seq208 Length=10633 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| ||||| ||||||||||| || || | | || || || Sbjct 9463 TCTCAAGACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCC 9522 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| |||||| || || ||||| | | || || ||||| || | ||| ||||| Sbjct 9523 ATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCAGGTGGGATTCCCTCCTT 9582 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||||| || || || || |||||||| || || ||||| | ||||| Sbjct 9583 ATCCTGGATCTTTTGCTTGACATTGTCAATGGTGTCTGAAGACTCCACCTCCAAGGTGAT 9642 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| | ||||| || || | |||||||| Sbjct 9643 AGTCTTACCCGTCAAGGTCTTAACGAAAATTTGCATTTT 9681 >seq257 Length=61483 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 |||||||||||||| |||||||| || ||||||||| | ||||||| ||| | ||| | Sbjct 60376 CTTCCAAAGAAGCATGGAAGAGGTGGTCAATCTGCTGTTCGTTTTGCCAGATTAAGAATG 60317 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAG 139902 || ||||| || || || | ||||| ||||| ||| Sbjct 60316 GAGAAGAGACATAATTATATTAGAAAGGTTGCCGAG 60281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159137475100970