Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq290 259 4e-64 >seq290 Length=58723 Score = 259 bits (286), Expect = 4e-64 Identities = 608/905 (67%), Gaps = 27/905 (3%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| || ||||| || || |||| ||| || ||||| ||||| || || | || Sbjct 52787 AACACCAGCCTTCTGGTAGTCAGAAACTCTCTTCTCAAAGAAGTTAGTCTTACCAGCCAA 52846 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||||| || |||||||| || || ||||| || || |||||| ||| ||||| | Sbjct 52847 GGAAATGTTCTCCATAAAGTCGAATGGATTGGTAGCATTGTAAACTTTCTCACATCCCAA 52906 Query 4367 AGCTACAAGCAATCGGTCAGCTACA-AATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425 ||| | |||||||| ||| || ||| ||||| | ||| ||| ||| | ||| |||| | Sbjct 52907 AGCAATAAGCAATCTGTCGGC-ACAGAATTCAACATAATGGGCCATCATATCGAAGTTCA 52965 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAA-AAACTCTTGTTCTATAGTTACGGCT 4484 | |||| || || || || || | || | ||| |||| | | ||| | || || Sbjct 52966 TACCAAGCAAAGAAACTGGGAGAGCATCACTCCAGAAAGTCTTCT-CAATATTGACAGCC 53024 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAAT 4544 || || || || | || || || | ||| ||| || || | ||||| Sbjct 53025 TCGGTCATAATTTTCTTAATAATAACCTTACTAGGTGGATGCTTCAAATGAGAGAACAAG 53084 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 | || || |||||| ||| | ||| || || |||| ||| || || || || || || Sbjct 53085 AGGCATGCGAAATCAGTATGTAGACCCTCATCCCTGCAAATAAGCTCATTGGAGAAGGTA 53144 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||| ||||||||||| || | ||| || |||| |||||| || ||||| ||| Sbjct 53145 AGTCCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAG 53204 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCG----GGACCCGAACGAGCTGGCTTT 4720 || | || || | ||| ||||| || || |||| | | | || | | | || Sbjct 53205 AAAACACCCTCGATGGCAGCAAAGGCGACCAATCTCTCAGCATACAAAGCATCAT-CATT 53263 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 || | |||||| | || ||||| ||| |||| ||||| ||||| || | || Sbjct 53264 GTTT---ATCCATCTCAAAGCCCATAGAGCCTTTTCCTTAATAGGTGGAATGGTATGGAT 53320 Query 4781 AGCGTTAAATAATTT-----ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835 ||| || || || | ||| || | | ||| || || || || | || Sbjct 53321 AGCATTGAACAAGTAGTCGGACTCCTT-CTTGTCGGTGATG----TACGTTTCAAGTAAA 53375 Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895 ||| || | ||||| || || || || | |||||| || ||||||||| ||| Sbjct 53376 AGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAATCTGGAAACCGTAAAAGGCTCTT 53435 Query 4896 GCTTCTGTTACTTGAACTTCGTT-ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACC 4954 ||||||| || |||||| | || | |||| ||| | | ||||| |||| || ||||| Sbjct 53436 GCTTCTGGTAATTGAACCTGCTTCATGAAAT-TTTGTGCCAAGTTCTCGTCAACAATACC 53494 Query 4955 GTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA---CTGTTCGTCAGGCTT 5011 ||| || |||||||| ||||||||| | ||||||||||| || | | || | | Sbjct 53495 ATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAAAGTATCTCTCGTTGGCATTCAT 53554 Query 5012 AAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 || ||||||| | ||| || |||| | ||||| || ||| |||||||||| || Sbjct 53555 CTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAATCTCCTCAGCAGTCCAAAAAGA 53614 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||||| || || ||||| ||| |||||| |||||||| || | || ||||| Sbjct 53615 GGCCTCCGCCTTCTTATACATTTGCCATATATCATCGTACTGAATAGGGAACATCACAAA 53674 Query 5132 TCTGT 5136 ||||| Sbjct 53675 TCTGT 53679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044509835674