Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brettanomyces_20bruxellensis_20[genbank_20GCA_5F001719535.1_202016- 09-05] 978 sequences; 11,766,522 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq290 235 8e-57 seq14 187 3e-42 >seq290 Length=58723 Score = 235 bits (260), Expect = 8e-57 Identities = 576/865 (67%), Gaps = 16/865 (2%) Strand=Plus/Plus Query 47871 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTA 47930 ||||| || || ||||| || || |||| || || || |||||||| || |||||||| Sbjct 52818 TTCTCAAAGAAGTTAGTCTTACCAGCCAAGGAAATGTTCTCCATAAAGTCGAATGGATTG 52877 Query 47931 ACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 47990 ||||| |||| ||| | | |||| || | || || ||| || ||| |||||| Sbjct 52878 GTAGCATTGTAAACTTTCTCACATCCCAAAGCAATAAGCAATCTGTCGGCACAGAATTCA 52937 Query 47991 ATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTA 48050 | ||| |||||| || | ||||| || | | |||||| ||||| || | Sbjct 52938 ACATAATGGGCCATCATATCGAAGTTCATACCAAGCAAAGAAACTGGGAGAGCATCACTC 52997 Query 48051 -AGAAACTCTTGTTCGATAGTGACAGCATC---CACTATTATCGATGTTACCGTTTCCTC 48106 ||||| |||| | | ||| ||||||| || || ||| || | | | ||| Sbjct 52998 CAGAAAGTCTTCT-CAATATTGACAGCCTCGGTCATAATTTTCTTAATAA---TAACCTT 53053 Query 48107 ACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTC 48166 ||| ||||||| | |||||| |||| | ||||| |||||| ||| ||||| || Sbjct 53054 ACTAGGTGGATGCTTCAAATGAGAGAACAAGAGGCATGCGAAATCAGTATGTAGACCCTC 53113 Query 48167 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAG 48226 ||| || | ||| | || || || || || || || ||||| | || | || || | Sbjct 53114 ATCCCTGCAAATAAGCTCATTGGAGAAGGTAAGTCCAGGCATCAAACCTCTCTTCTTCAA 53173 Query 48227 CCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGT 48286 ||| || || | || || || ||||| ||||| | || || | ||| ||||| ||| Sbjct 53174 CCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAACACCCTCGATGGCAGCAAAGGCGAC 53233 Query 48287 AAGTCTCTCTCCGTAACTGGCTTCGT---TGTGTATCCACCGTTGTGCCCAATCAGCCTT 48343 | |||||| | || || || | ||| |||||| | ||||| |||||| Sbjct 53234 CAATCTCTCAGCATACAAAGCATCATCATTGTTTATCCATCTCAAAGCCCATAGAGCCTT 53293 Query 48344 CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATC 48403 | ||| | | || || || | |||||||| || | ||| || || | || Sbjct 53294 TTCCTTAATAGGTGGAATGGTATGGATAGCATTGAACAAGTAGTCGGACTCCTTCTTGTC 53353 Query 48404 TTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCAT 48463 | | ||| || || | |||||| || | || ||||| || || |||| || Sbjct 53354 GGTGATGTACGTTTCAAGTAAAAGGGAGTAGGTCTCAGAGTGGATGTTCTCAACCATAAT 53413 Query 48464 CTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT-ACAAAATCGTTCAG 48522 ||| || |||||||| ||| ||||||| | || |||| | | | |||| || | Sbjct 53414 CTGGAAACCGTAAAAGGCTCTTGCTTCTGGTAATTGAACCTGCTTCATGAAATT-TTGTG 53472 Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 |||| ||||| | || || |||||| ||| ||||||||||| || ||| | |||| Sbjct 53473 CCAAGTTCTCGTCAACAATACCATCAGAAGCGGCAAAAAATGCCAAAACACGCGATATAA 53532 Query 48583 AATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTA 48639 | ||| | ||||||| | ||| || ||||||||| | | || || || | ||| | Sbjct 53533 AGTATCTCTCGTTGGCATTCATCTTGTTGTTCCAGTCAGTCAAGTCCTTAGAGAGATCAA 53592 Query 48640 CTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGT 48699 || ||||| |||||||| || ||||| || || |||||||| | |||||||||| || Sbjct 53593 TCTCCTCAGCAGTCCAAAAAGAGGCCTCCGCCTTCTTATACATTTGCCATATATCATCGT 53652 Query 48700 ATTGGATTGGGAAAATAACAAATCT 48724 | || || ||||| || |||||||| Sbjct 53653 ACTGAATAGGGAACATCACAAATCT 53677 >seq14 Length=27313 Score = 187 bits (206), Expect = 3e-42 Identities = 730/1134 (64%), Gaps = 18/1134 (2%) Strand=Plus/Plus Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATA 77816 ||||| || |||| || | ||| || |||||| | ||||| | ||||| |||| || Sbjct 17355 TTGATGGTTCCCAAGTTCTTTTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAATCATG 17414 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTT 77874 || || || |||||||| |||| | || | ||| | ||| | ||| || ||| | Sbjct 17415 AAAGGCGTACCGGTTTCTGTCTGAGCCTCCAAAATCTGATACCACA--ACTTCTGAGCCT 17472 Query 77875 TTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCAT 77934 | | | | | || | ||| | || || |||| || | | |||||| || | Sbjct 17473 TAACGGTTCTTCTTCCACGTCCCTCCTTCTCGTAACGAGTGTACAACTTTTCAAACTCGT 17532 Query 77935 CTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCAT 77994 | || ||||||| | || ||| ||| || | | ||| | ||| | ||| Sbjct 17533 CACCATAAACATCTGAAAGACCTGGGGCCTCAGAAGGAGAAAACAAAGTCCATGTATCAT 17592 Query 77995 CTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGG 78054 || | ||| || ||||| || |||||||| ||||| ||||| || | ||| || | Sbjct 17593 TTTGTTCAACACGCTTCATGAATAGATCAGGGATCCAAAGAGCTGGGAACAAATCACGTG 17652 Query 78055 TTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAAT 78114 | || || || || |||||| | | ||||| || || | ||||| | || Sbjct 17653 CACGGATCTCCTCCTTACCGTGATTCTTCCTGATATCGATGAAGTCAAAGATATCTGCAT 17712 Query 78115 GCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATAT 78174 |||| ||||||| || || || || | || |||| || ||||| || || || | || Sbjct 17713 GCCAAGGTTCTAAGTAGATAGCAATGGCACCTGGTCTCTTGTTACCACCTTGGTCAACAT 17772 Query 78175 ATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTG 78234 | || || || | || | || | | ||| ||||||||||| || ||||| || || | Sbjct 17773 ACCTAGCAGTACTGTTGAACACACGAACCATAGGAATAATACCATTGGATGTACCGTTGG 17832 Query 78235 TTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTG 78294 | |||| ||| || || | | ||||| ||| ||| || || || || || | Sbjct 17833 TACCAGCAATGTATGAACCTGTAGAACGAATGTTATGAATATGTAGACCAATACCACCAG 17892 Query 78295 CCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCAT 78354 || |||| || || | || || ||||||| || ||||||||||| || ||| ||||| Sbjct 17893 CCGTCTTGGAAATCAAGGCACACTGTTTCAAAGTGTCGTAGATACCTTCAATAGAGTCAT 17952 Query 78355 CCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATA 78414 || |||| || | || || ||||| || | | ||| || |||||||| | Sbjct 17953 CCTTCATTGCAACTAAGAAGCAAGACGACATCTGTGGGCGTGGAGTACCGGCATTAAACA 18012 Query 78415 ATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTG 78474 |||| ||||| || || || || || | | || | | || || | || | | || Sbjct 18013 ATGTTGGAGAGGCGTGTGTGAAGTATCTCTTCGACATCAAATCATACGACTCCAAAACTT 18072 Query 78475 ATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTT 78533 || || || | |||||||| || || || | ||| | | ||||||||| || Sbjct 18073 TAGGAATATCATCACCG-TGAATTCCAACGGCAACTCTCATAAGAAGATGCTGAGGCCTC 18131 Query 78534 TCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 78593 || | |||| |||||| |||||| ||||| || | || ||||| ||||| Sbjct 18132 TCTGCAACCTTACCATTTATCCTCAACAGATATGAACGCTCTAGGGTCTTAAAGCCAAAG 18191 Query 78594 TAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATT 78651 ||||| || ||||| || | || || |||| | || || | | ||| |||| | Sbjct 18192 TAGTTATAGCTGAAA--TCACGGTCATAGTTAATGGCCGAGTTCAACTCATCCTTGTGCT 18249 Query 78652 TGGTAACAATATCCATG-ACAGTAGTT--GAAATAATAGGAGA-TCGTACACCATTTTTA 78707 | | ||||| | || | | | || || || ||||| || | | | ||||| Sbjct 18250 TCATGACAAT---CTTGTAAACTTCTTCAGAGATCATAGGGGATTTCTTCTGGGTTTTT- 18305 Query 78708 GGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTG 78767 || ||| |||||| | | |||||| || |||||| ||| | || || || | |||| Sbjct 18306 GGGTTATAATAGTTGTAAAGATCTTCAATAACATCAGAGAATGGCTTCTTAGTCTGCTTG 18365 Query 78768 TGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTA 78827 || | |||||| | || | ||| || || | | |||||||||| ||||| ||||| Sbjct 18366 TGCAAATTAGAAATGGCAAGTCTGGCGGCCAAAGTAGCATAATCTGGATGAATGGTAGTC 18425 Query 78828 CAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCA 78881 | || || |||| || | ||| | || ||||| ||||| || || ||| Sbjct 18426 ATATATGCCGCAGTTTCAGCAGTTAAGTTGTCCAACTCAATAGTGGTAACACCA 18479 Score = 100 bits (110), Expect = 4e-16 Identities = 356/548 (65%), Gaps = 9/548 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 |||| | |||||| | ||||||||||| || || | |||| |||| ||||| || Sbjct 16386 GCGGCCTGTGTACGCAAGTAGTACATACCTGTCTTCAAACCCTTCTTCCAGCCGTAAAAG 16445 Query 76863 TGCATGCTTGTCAGTTTGGA-ATAACTAG-GATCGGCTATATGAATATTCATCGACTGAC 76920 |||||| |||| || ||| | | ||| | | || || ||||| || ||| Sbjct 16446 TGCATGGACGTCAACTTACCCATAGTTGGCGATTGC--AAGTGGATGTTCATGGATTGAG 16503 Query 76921 TTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTT 76980 || ||| | || ||||| || || ||||| | || | | || |||| || || Sbjct 16504 ACTGGCAAATGTAGGCACCTCTGTCGGCAGCCATGTCGATGACAGATTTCTGAGAAAGTT 16563 Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG-TA--TTTTGAATGG 77037 |||||| ||| || | | || || || | ||||||| || | || || ||||||| Sbjct 16564 CCCAAACAGTCCTGTACAATTTCTTAATGTTGTCTGGAATATTAGGTAAGTTCTGAATGG 16623 Query 77038 AACCACCATC-TGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 | ||| || ||| || || |||||| || |||| ||||| | | | | || | Sbjct 16624 ATCCATTGTCATGA-ATGATGAAATTCTTCATTGCATCGTTCCATATTCCCATATCAATA 16682 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 | | || || | | |||||| || || || || || |||| | ||||| | Sbjct 16683 AGGTCCCTTAGCATGTAAGGATTGACAATCTGGAACTCACCAGCAAGAACTCTTCTCTGA 16742 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 || || ||| ||| |||| || | | || |||| |||| ||| |||| ||||| Sbjct 16743 TAGATGTTAGAGGTGAATGGCTCAAAGCACTCGTTGTAACCCATAATCTGAGAGGTAGAG 16802 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 |||||||||||||| || ||||| | |||||| ||||||| | ||| || | Sbjct 16803 GCAGTTGGCATAGGAGCGACCAAAAGCGAATTTCTAAGACCATCCTTAGCGATCTTGGCC 16862 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGA 77336 || | | | ||||||||| ||||| | || || ||| | |||||| || ||| Sbjct 16863 TTCAAAGTCTCCCAATCCCACAGATCAGTTGGCTTCTTATTCCACATATCGTACTGGAGA 16922 Query 77337 ATTCCGTT 77344 || || || Sbjct 16923 ATACCCTT 16930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660307673920